Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eukaryota_20sp._20EH-2015_20[genbank_20GCA_5F001655205.1_202016-06- 03] 11,727 sequences; 48,996,813 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq3694 156 9e-33 seq1059 127 5e-24 seq10586 84.2 5e-11 seq5344 84.2 5e-11 >seq3694 Length=8734 Score = 156 bits (172), Expect = 9e-33 Identities = 160/209 (77%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 ||||||||||| || ||||| || || || ||||| |||| |||||| | ||||||||| Sbjct 3751 ACAAGGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTCGGAAAGAGTACGGCCATCTTCG 3692 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || ||||||||||| |||||||| || ||||| || ||||| |||||||| Sbjct 3691 AGCTGCTTGCCGGCGAAGATAAGACGTTGTTGATCGGGAGGGATTCCTTCCTTGTCTTGG 3632 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || ||||||||| || ||||| || | || || || ||||| | ||||| Sbjct 3631 ATCTTAGCCTTGACGTTGTCGATGGTATCGGCGGGGTCAACCTCGAGGGTGATGGTCTTG 3572 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || | || || ||||| | ||||| Sbjct 3571 CCCGTGAGGGTCTTCACGAAAATCTGCAT 3543 >seq1059 Length=4692 Score = 127 bits (140), Expect = 5e-24 Identities = 147/198 (74%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 194944 GTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCT 195003 || || || || |||||||| ||||| | | |||||| |||||||| | ||||| ||| Sbjct 2322 GTTGATTCCTTCTGAATATTATAATCAGATAAAGTTCTTCCATCTTCCAATTGCTTTCCT 2263 Query 195004 GCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTG 195063 || || || | || |||||| || || || || |||||||||||||| ||||| || Sbjct 2262 GCAAAAATCAATCTTTGTTGATCAGGTGGGATTCCTTCTTTGTCTTGGATTTTGGCTTTA 2203 Query 195064 ACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTT 195123 || || ||||| || || ||| ||| ||||| | |||| || || || ||||| || Sbjct 2202 ACATTATCAATAGTATCAGAAGATTCAACTTCCAAAGTAATGGTTTTGCCAGTCAAGGTC 2143 Query 195124 TTTACGAACACTTGCATT 195141 ||||| || | ||||||| Sbjct 2142 TTTACAAAGATTTGCATT 2125 >seq10586 Length=11357 Score = 84.2 bits (92), Expect = 5e-11 Identities = 88/116 (76%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 195016 CGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATG 195075 ||||||||||| ||||| |||||||| |||||||| || || ||| || || || ||| Sbjct 11356 CGTTGTTGGTCGGGAGGGATGCCTTCCTTGTCTTGGATCTTGGCCTTCACATTGTCGATG 11297 Query 195076 GTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAA 195131 ||||| ||| || ||||| ||||| | ||||| || || | || || ||||| Sbjct 11296 GTGTCTGAAGACTCAACTTCGAGGGTGATGGTCTTGCCAGTGAGGGTCTTCACGAA 11241 >seq5344 Length=321 Score = 84.2 bits (92), Expect = 5e-11 Identities = 88/116 (76%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 195016 CGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATG 195075 ||||||||||| ||||| |||||||| |||||||| || || ||| || || || || Sbjct 2 CGTTGTTGGTCGGGAGGGATGCCTTCCTTGTCTTGGATCTTGGCCTTCACATTGTCGATT 61 Query 195076 GTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAA 195131 ||||| ||| ||| ||||| ||||| | ||||| || || | || || ||||| Sbjct 62 GTGTCTGAAGATTCAACTTCGAGGGTGATGGTCTTGCCAGTGAGGGTCTTCACGAA 117 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109314897962609