Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eukaryota_20sp._20EH-2015_20[genbank_20GCA_5F001655205.1_202016-06- 03] 11,727 sequences; 48,996,813 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq1059 127 2e-23 seq8340 86.0 5e-11 >seq1059 Length=4692 Score = 127 bits (140), Expect = 2e-23 Identities = 140/184 (76%), Gaps = 2/184 (1%) Strand=Plus/Minus Query 563292 AATATTGTAATCAGCTAGAGTTCTTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCT 563351 |||||| ||||||| || ||||||| |||||| | ||| ||||| |||||||| | ||| Sbjct 2308 AATATTATAATCAGATAAAGTTCTTCCATCTTCCAATTGCTTTCCTGCAAAAATCAATCT 2249 Query 563352 TTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGT 563411 ||| |||||||| || ||||||||||| ||||| ||||| ||| || ||||| || Sbjct 2248 TTGTTGATCAGGTGGGATTCCTTCTTTGTCTTGGATTTTGGCTTTAACATTATCAATAGT 2189 Query 563412 ATCAGTGTGAGT-ACATTCGAGAGTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTT 563470 ||||| || | | ||| | ||||| ||||| ||||| | || || || || |||| Sbjct 2188 ATCAG-AAGATTCAACTTCCAAAGTAATGGTTTTGCCAGTCAAGGTCTTTACAAAGATTT 2130 Query 563471 GCAT 563474 |||| Sbjct 2129 GCAT 2126 >seq8340 Length=44800 Score = 86.0 bits (94), Expect = 5e-11 Identities = 110/152 (72%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 549992 GCTATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAAA 550051 ||| | ||||| ||| | || ||||| || ||||||||||||||||| |||| Sbjct 9810 GCTGTTGGTATTGATCTTGGTACCACCTACTCCTGTGTTGGTGTTTGGCAGAATGACCGT 9869 Query 550052 GTTGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACG 550111 || ||||| || ||||| || || |||||| | || || || ||||| || ||||||| Sbjct 9870 GTCGAAATCATCGCCAACGACCAGGGTAACCGCACCACCCCTTCTTACGTCGCTTTCACT 9929 Query 550112 GAAACTGAACATTTAGTTGGTGATGCAGCAAA 550143 || |||| | | |||||||||| || || Sbjct 9930 GAGTCTGAGCGCCTCATTGGTGATGCTGCTAA 9961 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4028675823351230