Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eukaryota_20sp._20EH-2015_20[genbank_20GCA_5F001655205.1_202016-06- 03] 11,727 sequences; 48,996,813 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq1059 154 1e-32 seq3694 91.5 1e-13 >seq1059 Length=4692 Score = 154 bits (170), Expect = 1e-32 Identities = 160/210 (76%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 101260 AACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTC 101319 ||| ||||| | || ||||| || || ||||| ||||| | | |||||| |||| || Sbjct 2335 AACCAAATGCAATGTTGATTCCTTCTGAATATTATAATCAGATAAAGTTCTTCCATCTTC 2276 Query 101320 CAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTG 101379 ||||||||| |||||||| ||||| | |||||||| || || || |||||||| ||||| Sbjct 2275 CAATTGCTTTCCTGCAAAAATCAATCTTTGTTGATCAGGTGGGATTCCTTCTTTGTCTTG 2216 Query 101380 AATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTT 101439 ||||| ||| ||| | || | ||| ||||| | ||| ||||| | ||| | ||||| Sbjct 2215 GATTTTGGCTTTAACATTATCAATAGTATCAGAAGATTCAACTTCCAAAGTAATGGTTTT 2156 Query 101440 GCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 ||| || || || |||||||| || ||||| Sbjct 2155 GCCAGTCAAGGTCTTTACAAAGATTTGCAT 2126 >seq3694 Length=8734 Score = 91.5 bits (100), Expect = 1e-13 Identities = 145/208 (70%), Gaps = 0/208 (0%) Strand=Plus/Minus Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326 ||||||||||| || || || || ||||| |||| | ||| | | |||| || | ||| Sbjct 3745 TGAAGGGTAGACTCCTTCTGGATGTTGTAGTCGGAAAGAGTACGGCCATCTTCGAGCTGC 3686 Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386 || || || || || | ||| ||||||||||| || || ||||| || ||||| || || Sbjct 3685 TTGCCGGCGAAGATAAGACGTTGTTGATCGGGAGGGATTCCTTCCTTGTCTTGGATCTTA 3626 Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446 || || | || | || || | | || || || || |||| || ||||| || Sbjct 3625 GCCTTGACGTTGTCGATGGTATCGGCGGGGTCAACCTCGAGGGTGATGGTCTTGCCCGTG 3566 Query 101447 AAAGTTTTTACAAATATCTGCATGGTTA 101474 | || || || || |||||||||| || Sbjct 3565 AGGGTCTTCACGAAAATCTGCATGGCTA 3538 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396221762776539