Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eukaryota_20sp._20EH-2015_20[genbank_20GCA_5F001655205.1_202016-06- 03] 11,727 sequences; 48,996,813 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq1059 132 3e-25 seq3694 129 4e-24 seq8340 91.5 1e-12 >seq1059 Length=4692 Score = 132 bits (146), Expect = 3e-25 Identities = 163/220 (74%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610 |||||| || || || | ||| | ||| ||| || || ||||||||||| || ||| Sbjct 2347 ACGAAGGCGAAGAACCAAATGCAATGTTGATTCCTTCTGAATATTATAATCAGATAAAGT 2288 Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670 ||| |||||| | ||||||||| |||||||| | | |||||||||||| || ||||| Sbjct 2287 TCTTCCATCTTCCAATTGCTTTCCTGCAAAAATCAATCTTTGTTGATCAGGTGGGATTCC 2228 Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAA 480729 ||| |||||||| || || ||| ||| ||||||||||||| | | || || ||| Sbjct 2227 TTCTTTGTCTTGGATTTTGGCTTTAACATTATCAATAGTATCAGAAGATTCAACTTCCAA 2168 Query 480730 GGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 ||||| ||||| || || | ||||| || || ||||| Sbjct 2167 -AGTAATGGTTTTGCCAGTCAAGGTCTTTACAAAGATTTG 2129 >seq3694 Length=8734 Score = 129 bits (142), Expect = 4e-24 Identities = 160/219 (73%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610 |||||||||||| ||||| ||||| ||| || || | || || || | ||||| Sbjct 3764 ACGAAGACGGAGCACAAGGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTCGGAAAGAGT 3705 Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670 | | |||||| || ||||| || || || ||||||||||||||||| ||||| ||||| Sbjct 3704 ACGGCCATCTTCGAGCTGCTTGCCGGCGAAGATAAGACGTTGTTGATCGGGAGGGATTCC 3645 Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAG 480730 |||||||||||| ||||| ||||| || || ||||| | | | | || || Sbjct 3644 TTCCTTGTCTTGGATCTTAGCCTTGACGTTGTCGATGGTATCGGCGGGGTCAACCTCGAG 3585 Query 480731 GGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 ||| || || || || ||||| ||||| |||||||| || Sbjct 3584 GGTGATGGTCTTGCCCGTGAGGGTCTTCACGAAAATCTG 3546 >seq8340 Length=44800 Score = 91.5 bits (100), Expect = 1e-12 Identities = 109/148 (74%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 474333 TTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGTAAAGTAG 474392 ||||||||||| | || || || ||| ||||| | ||||||||| |||| || | Sbjct 9814 TTGGTATTGATCTTGGTACCACCTACTCCTGTGTTGGTGTTTGGCAGAATGACCGTGTCG 9873 Query 474393 AAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTACTGAAA 474452 |||| || ||||| ||||| ||||| | || || || || || || |||| ||||| Sbjct 9874 AAATCATCGCCAACGACCAGGGTAACCGCACCACCCCTTCTTACGTCGCTTTCACTGAGT 9933 Query 474453 CTGAACATCTTATTGGAGATGCTGCTAA 474480 |||| | || ||||| ||||||||||| Sbjct 9934 CTGAGCGCCTCATTGGTGATGCTGCTAA 9961 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3267676172070596