Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eukaryota_20sp._20EH-2015_20[genbank_20GCA_5F001655205.1_202016-06- 03] 11,727 sequences; 48,996,813 total letters Query= NC_020864.1 Length=205622 Score E Sequences producing significant alignments: (Bits) Value seq3694 194 2e-44 seq1059 143 4e-29 seq7467 129 8e-25 seq5344 125 9e-24 seq10586 120 4e-22 seq8340 111 2e-19 seq6633 102 1e-16 >seq3694 Length=8734 Score = 194 bits (214), Expect = 2e-44 Identities = 181/230 (79%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||| || || ||||| ||||| || || || || ||||||||||||||||| | | Sbjct 3543 ATGCAGATTTTCGTGAAGACCCTCACGGGCAAGACCATCACCCTCGAGGTTGACCCCGCC 3602 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 || || ||||| ||| |||| || ||||| ||||| |||||||| || || |||||||| Sbjct 3603 GATACCATCGACAACGTCAAGGCTAAGATCCAAGACAAGGAAGGAATCCCTCCCGATCAA 3662 Query 171982 CAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAAC 172041 ||||| ||||| || || || || ||||| |||||||| ||||| || | || |||||| Sbjct 3663 CAACGTCTTATCTTCGCCGGCAAGCAGCTCGAAGATGGCCGTACTCTTTCCGACTACAAC 3722 Query 172042 GTTCAAAAGGAGTCTACTCTACACCTTGTTCTAAGGCTTCGGGGTGGTGC 172091 | || ||||||||||| || |||||||| || | ||||| |||||||| Sbjct 3723 ATCCAGAAGGAGTCTACCCTTCACCTTGTGCTCCGTCTTCGTGGTGGTGC 3772 >seq1059 Length=4692 Score = 143 bits (158), Expect = 4e-29 Identities = 168/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 |||||||||||||| || ||| | ||||| ||||| || || | || ||||| || || Sbjct 2126 ATGCAAATCTTTGTAAAGACCTTGACTGGCAAAACCATTACTTTGGAAGTTGAATCTTCT 2185 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 || || || ||||| | |||||||| || ||||| || ||||| || ||||| ||||| Sbjct 2186 GATACTATTGATAATGTTAAAGCCAAAATCCAAGACAAAGAAGGAATCCCACCTGATCAA 2245 Query 171982 CAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAAC 172041 ||| || | |||||||| || || || | ||||||||| | || | ||||||| || Sbjct 2246 CAAAGATTGATTTTTGCAGGAAAGCAATTGGAAGATGGAAGAACTTTATCTGATTATAAT 2305 Query 172042 GTTCAAAAGGAGTCTACTCTACACCTTGTTCTAAGGCTTCGGGGTGG 172088 |||| ||||| || || | || | ||||| | ||||| ||||| Sbjct 2306 ATTCAGAAGGAATCAACATTGCATTTGGTTCTTCGCCTTCGTGGTGG 2352 >seq7467 Length=39963 Score = 129 bits (142), Expect = 8e-25 Identities = 124/159 (78%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 195299 GCTATTGGTATCGATTTAGGAACTACTTACTCATGTGTTGGTGTATGGCAAAATGATCGT 195358 || ||||| || ||| | ||||| |||||||| |||||||| || ||||| ||||| ||| Sbjct 9065 GCCATTGGAATTGATCTTGGAACCACTTACTCCTGTGTTGGAGTCTGGCAGAATGAACGT 9124 Query 195359 GTAGAGATTATCCCGAATGACCAAGGAAACCGTACAACTCCATCGTACGTTGCCTTTACA 195418 || || || ||| | || || ||||| ||||| || ||||| || | ||||||||||| Sbjct 9125 GTTGAAATCATCGCCAACGATCAAGGCAACCGAACTACTCCTTCTTTTGTTGCCTTTACC 9184 Query 195419 GATAATGAACGTCTCGTTGGAGATGCCGCAAAAAATCAG 195457 || || || |||||| |||| ||||| || || || ||| Sbjct 9185 GAGAACGAGCGTCTCATTGGTGATGCTGCCAAGAACCAG 9223 >seq5344 Length=321 Score = 125 bits (138), Expect = 9e-24 Identities = 99/119 (83%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 171868 ATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCAGACACA 171927 ||||| ||||| ||||| ||||| || || ||||||||||| ||||| || ||||||||| Sbjct 120 ATCTTCGTGAAGACCCTCACTGGCAAGACCATCACCCTCGAAGTTGAATCTTCAGACACA 61 Query 171928 ATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAGCAACG 171986 ||||| || | || |||||||| ||||| ||||||||||| || ||||| || ||||| Sbjct 60 ATCGACAATGTGAAGGCCAAGATCCAAGACAAGGAAGGCATCCCTCCCGACCAACAACG 2 >seq10586 Length=11357 Score = 120 bits (132), Expect = 4e-22 Identities = 98/119 (82%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 171868 ATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCAGACACA 171927 || || ||||| ||||| ||||| || || ||||||||||| |||||||| |||||||| Sbjct 11238 ATTTTCGTGAAGACCCTCACTGGCAAGACCATCACCCTCGAAGTTGAGTCTTCAGACACC 11297 Query 171928 ATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAGCAACG 171986 ||||| || | || |||||||| ||||| ||||||||||| || ||||| || ||||| Sbjct 11298 ATCGACAATGTGAAGGCCAAGATCCAAGACAAGGAAGGCATCCCTCCCGACCAACAACG 11356 >seq8340 Length=44800 Score = 111 bits (122), Expect = 2e-19 Identities = 120/159 (75%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 195299 GCTATTGGTATCGATTTAGGAACTACTTACTCATGTGTTGGTGTATGGCAAAATGATCGT 195358 ||| ||||||| ||| | || || || ||||| ||||||||||| ||||| ||||| ||| Sbjct 9810 GCTGTTGGTATTGATCTTGGTACCACCTACTCCTGTGTTGGTGTTTGGCAGAATGACCGT 9869 Query 195359 GTAGAGATTATCCCGAATGACCAAGGAAACCGTACAACTCCATCGTACGTTGCCTTTACA 195418 || || || ||| | || ||||| || ||||| || || || || ||||| || || || Sbjct 9870 GTCGAAATCATCGCCAACGACCAGGGTAACCGCACCACCCCTTCTTACGTCGCTTTCACT 9929 Query 195419 GATAATGAACGTCTCGTTGGAGATGCCGCAAAAAATCAG 195457 || ||| || ||| |||| ||||| || || || ||| Sbjct 9930 GAGTCTGAGCGCCTCATTGGTGATGCTGCTAAGAACCAG 9968 >seq6633 Length=51485 Score = 102 bits (112), Expect = 1e-16 Identities = 98/126 (78%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 195382 AGGAAACCGTACAACTCCATCGTACGTTGCCTTTACAGATAATGAACGTCTCGTTGGAGA 195441 ||||||||||| ||||| || ||||| || ||||| || ||||||||| |||||||| Sbjct 38894 AGGAAACCGTATCACTCCCTCTTACGTGGCTTTTACCGAATCTGAACGTCTTGTTGGAGA 38835 Query 195442 TGCCGCAAAAAATCAGACAGCTATGAACCCTATCAATACTGTCTTTGACGCGAAGCGTCT 195501 | | || || || || | | ||||||||| || |||||||| || || |||||||| Sbjct 38834 TTCAGCGAAGAACCAAGCTTCAATGAACCCTGAGAACACTGTCTTCGATGCCAAGCGTCT 38775 Query 195502 TATTGG 195507 |||||| Sbjct 38774 TATTGG 38769 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657765965595440