Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eukaryota_20sp._20EH-2015_20[genbank_20GCA_5F001655205.1_202016-06- 03] 11,727 sequences; 48,996,813 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq1059 206 5e-48 seq3694 129 1e-24 >seq1059 Length=4692 Score = 206 bits (228), Expect = 5e-48 Identities = 176/217 (81%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 82596 CGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCG 82655 || ||||| || |||| || ||||| ||||| |||||||||||||||| | |||| || Sbjct 2340 CGAAGAACCAAATGCAATGTTGATTCCTTCTGAATATTATAATCAGATAAAGTTCTTCCA 2281 Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715 ||||| | ||| ||||| ||||| || | |||||||||||| || || |||||||| || Sbjct 2280 TCTTCCAATTGCTTTCCTGCAAAAATCAATCTTTGTTGATCAGGTGGGATTCCTTCTTTG 2221 Query 82716 TCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATC 82775 ||||| || || ||||| ||||| ||||| |||||| || ||| ||||||||||| || Sbjct 2220 TCTTGGATTTTGGCTTTAACATTATCAATAGTATCAGAAGATTCAACTTCCAAAGTAATG 2161 Query 82776 GTCTTGCCTGTCAACGTCTTTACAAATATCTGCATTA 82812 || ||||| ||||| ||||||||||| || ||||||| Sbjct 2160 GTTTTGCCAGTCAAGGTCTTTACAAAGATTTGCATTA 2124 >seq3694 Length=8734 Score = 129 bits (142), Expect = 1e-24 Identities = 158/216 (73%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 82595 ACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACC 82654 ||| || || | ||| || ||||| || ||||| || || || || || ||| | | || Sbjct 3758 ACGGAGCACAAGGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTCGGAAAGAGTACGGCC 3699 Query 82655 GTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTT 82714 ||||| || || || || || ||||| || | ||||||||| ||||| ||||||||||| Sbjct 3698 ATCTTCGAGCTGCTTGCCGGCGAAGATAAGACGTTGTTGATCGGGAGGGATTCCTTCCTT 3639 Query 82715 ATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTAT 82774 ||||| ||||| || || || || || || ||||| || || || || | || || Sbjct 3638 GTCTTGGATCTTAGCCTTGACGTTGTCGATGGTATCGGCGGGGTCAACCTCGAGGGTGAT 3579 Query 82775 CGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||||||| || | ||||| || || |||||||| Sbjct 3578 GGTCTTGCCCGTGAGGGTCTTCACGAAAATCTGCAT 3543 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981679678315453