Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eukaryota_20sp._20EH-2015_20[genbank_20GCA_5F001655205.1_202016-06- 03] 11,727 sequences; 48,996,813 total letters Query= NC_024450.1 Length=204054 Score E Sequences producing significant alignments: (Bits) Value seq10470 89.7 7e-13 seq9878 89.7 7e-13 seq9541 89.7 7e-13 seq9339 89.7 7e-13 seq7584 89.7 7e-13 seq5970 89.7 7e-13 seq2893 89.7 7e-13 >seq10470 Length=13817 Score = 89.7 bits (98), Expect = 7e-13 Identities = 60/67 (90%), Gaps = 0/67 (0%) Strand=Plus/Minus Query 8663 GTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTCCCCGA 8722 |||||||||||||| ||||| |||| ||||| | |||||||||||||||||||||||||| Sbjct 11773 GTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTCCCCGA 11714 Query 8723 CGAGGAG 8729 | |||| Sbjct 11713 CACGGAG 11707 Score = 87.8 bits (96), Expect = 2e-12 Identities = 65/75 (87%), Gaps = 1/75 (1%) Strand=Plus/Minus Query 11727 CAGTCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGA 11785 || ||| |||||||||||||| ||||| |||| ||||| | |||||||||||||||||| Sbjct 11781 CAATCCGTGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGA 11722 Query 11786 TTCCCCGACGAGGAG 11800 ||||||||| |||| Sbjct 11721 TTCCCCGACACGGAG 11707 Score = 84.2 bits (92), Expect = 3e-11 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412 |||| |||||||| |||||||||||||||||| | |||| |||||||| | ||||||| Sbjct 11707 CTCCGTGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 11766 Query 139413 TACTAACGAGGATT 139426 ||||||| ||||| Sbjct 11767 TACTAACACGGATT 11780 >seq9878 Length=135689 Score = 89.7 bits (98), Expect = 7e-13 Identities = 60/67 (90%), Gaps = 0/67 (0%) Strand=Plus/Plus Query 8663 GTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTCCCCGA 8722 |||||||||||||| ||||| |||| ||||| | |||||||||||||||||||||||||| Sbjct 35584 GTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTCCCCGA 35643 Query 8723 CGAGGAG 8729 | |||| Sbjct 35644 CACGGAG 35650 Score = 87.8 bits (96), Expect = 2e-12 Identities = 65/75 (87%), Gaps = 1/75 (1%) Strand=Plus/Plus Query 11727 CAGTCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGA 11785 || ||| |||||||||||||| ||||| |||| ||||| | |||||||||||||||||| Sbjct 35576 CAATCCGTGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGA 35635 Query 11786 TTCCCCGACGAGGAG 11800 ||||||||| |||| Sbjct 35636 TTCCCCGACACGGAG 35650 Score = 84.2 bits (92), Expect = 3e-11 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412 |||| |||||||| |||||||||||||||||| | |||| |||||||| | ||||||| Sbjct 35650 CTCCGTGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 35591 Query 139413 TACTAACGAGGATT 139426 ||||||| ||||| Sbjct 35590 TACTAACACGGATT 35577 >seq9541 Length=4378 Score = 89.7 bits (98), Expect = 7e-13 Identities = 60/67 (90%), Gaps = 0/67 (0%) Strand=Plus/Minus Query 8663 GTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTCCCCGA 8722 |||||||||||||| ||||| |||| ||||| | |||||||||||||||||||||||||| Sbjct 415 GTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTCCCCGA 356 Query 8723 CGAGGAG 8729 | |||| Sbjct 355 CACGGAG 349 Score = 87.8 bits (96), Expect = 2e-12 Identities = 65/75 (87%), Gaps = 1/75 (1%) Strand=Plus/Minus Query 11727 CAGTCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGA 11785 || ||| |||||||||||||| ||||| |||| ||||| | |||||||||||||||||| Sbjct 423 CAATCCGTGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGA 364 Query 11786 TTCCCCGACGAGGAG 11800 ||||||||| |||| Sbjct 363 TTCCCCGACACGGAG 349 Score = 84.2 bits (92), Expect = 3e-11 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412 |||| |||||||| |||||||||||||||||| | |||| |||||||| | ||||||| Sbjct 349 CTCCGTGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 408 Query 139413 TACTAACGAGGATT 139426 ||||||| ||||| Sbjct 409 TACTAACACGGATT 422 >seq9339 Length=3711 Score = 89.7 bits (98), Expect = 7e-13 Identities = 60/67 (90%), Gaps = 0/67 (0%) Strand=Plus/Minus Query 8663 GTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTCCCCGA 8722 |||||||||||||| ||||| |||| ||||| | |||||||||||||||||||||||||| Sbjct 1373 GTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTCCCCGA 1314 Query 8723 CGAGGAG 8729 | |||| Sbjct 1313 CACGGAG 1307 Score = 87.8 bits (96), Expect = 2e-12 Identities = 65/75 (87%), Gaps = 1/75 (1%) Strand=Plus/Minus Query 11727 CAGTCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGA 11785 || ||| |||||||||||||| ||||| |||| ||||| | |||||||||||||||||| Sbjct 1381 CAATCCGTGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGA 1322 Query 11786 TTCCCCGACGAGGAG 11800 ||||||||| |||| Sbjct 1321 TTCCCCGACACGGAG 1307 Score = 84.2 bits (92), Expect = 3e-11 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412 |||| |||||||| |||||||||||||||||| | |||| |||||||| | ||||||| Sbjct 1307 CTCCGTGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 1366 Query 139413 TACTAACGAGGATT 139426 ||||||| ||||| Sbjct 1367 TACTAACACGGATT 1380 >seq7584 Length=14197 Score = 89.7 bits (98), Expect = 7e-13 Identities = 60/67 (90%), Gaps = 0/67 (0%) Strand=Plus/Plus Query 8663 GTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTCCCCGA 8722 |||||||||||||| ||||| |||| ||||| | |||||||||||||||||||||||||| Sbjct 12642 GTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTCCCCGA 12701 Query 8723 CGAGGAG 8729 | |||| Sbjct 12702 CACGGAG 12708 Score = 87.8 bits (96), Expect = 2e-12 Identities = 65/75 (87%), Gaps = 1/75 (1%) Strand=Plus/Plus Query 11727 CAGTCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGA 11785 || ||| |||||||||||||| ||||| |||| ||||| | |||||||||||||||||| Sbjct 12634 CAATCCGTGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGA 12693 Query 11786 TTCCCCGACGAGGAG 11800 ||||||||| |||| Sbjct 12694 TTCCCCGACACGGAG 12708 Score = 84.2 bits (92), Expect = 3e-11 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412 |||| |||||||| |||||||||||||||||| | |||| |||||||| | ||||||| Sbjct 12708 CTCCGTGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 12649 Query 139413 TACTAACGAGGATT 139426 ||||||| ||||| Sbjct 12648 TACTAACACGGATT 12635 >seq5970 Length=19091 Score = 89.7 bits (98), Expect = 7e-13 Identities = 60/67 (90%), Gaps = 0/67 (0%) Strand=Plus/Plus Query 8663 GTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTCCCCGA 8722 |||||||||||||| ||||| |||| ||||| | |||||||||||||||||||||||||| Sbjct 13415 GTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTCCCCGA 13474 Query 8723 CGAGGAG 8729 | |||| Sbjct 13475 CACGGAG 13481 Score = 87.8 bits (96), Expect = 2e-12 Identities = 65/75 (87%), Gaps = 1/75 (1%) Strand=Plus/Plus Query 11727 CAGTCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGA 11785 || ||| |||||||||||||| ||||| |||| ||||| | |||||||||||||||||| Sbjct 13407 CAATCCGTGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGA 13466 Query 11786 TTCCCCGACGAGGAG 11800 ||||||||| |||| Sbjct 13467 TTCCCCGACACGGAG 13481 Score = 84.2 bits (92), Expect = 3e-11 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412 |||| |||||||| |||||||||||||||||| | |||| |||||||| | ||||||| Sbjct 13481 CTCCGTGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 13422 Query 139413 TACTAACGAGGATT 139426 ||||||| ||||| Sbjct 13421 TACTAACACGGATT 13408 >seq2893 Length=3505 Score = 89.7 bits (98), Expect = 7e-13 Identities = 60/67 (90%), Gaps = 0/67 (0%) Strand=Plus/Minus Query 8663 GTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTCCCCGA 8722 |||||||||||||| ||||| |||| ||||| | |||||||||||||||||||||||||| Sbjct 969 GTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTCCCCGA 910 Query 8723 CGAGGAG 8729 | |||| Sbjct 909 CACGGAG 903 Score = 87.8 bits (96), Expect = 2e-12 Identities = 65/75 (87%), Gaps = 1/75 (1%) Strand=Plus/Minus Query 11727 CAGTCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGA 11785 || ||| |||||||||||||| ||||| |||| ||||| | |||||||||||||||||| Sbjct 977 CAATCCGTGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGA 918 Query 11786 TTCCCCGACGAGGAG 11800 ||||||||| |||| Sbjct 917 TTCCCCGACACGGAG 903 Score = 84.2 bits (92), Expect = 3e-11 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412 |||| |||||||| |||||||||||||||||| | |||| |||||||| | ||||||| Sbjct 903 CTCCGTGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 962 Query 139413 TACTAACGAGGATT 139426 ||||||| ||||| Sbjct 963 TACTAACACGGATT 976 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 652749101112880