Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eukaryota_20sp._20EH-2015_20[genbank_20GCA_5F001655205.1_202016-06- 03] 11,727 sequences; 48,996,813 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq3694 129 6e-25 seq10586 84.2 2e-11 >seq3694 Length=8734 Score = 129 bits (142), Expect = 6e-25 Identities = 152/203 (75%), Gaps = 2/203 (1%) Strand=Plus/Minus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 ||| ||||| ||||| || ||||| ||| | || | | | || ||||||||||||| Sbjct 3740 GGTAGACTCCTTCTGGATGTTGTAGTCGGAAAGAGTACGGCCA-TCTTCGAGCTGCTTGC 3682 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | ||| | || || || || || ||||||||||| ||||||||||| |||||| || Sbjct 3681 CGGCGAAGATAAGACGTTGTTGATCGGGAGGGATTCCTTCCTTGTCTTGGATCTTAGCCT 3622 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 ||| | || | || |||| ||| || || |||| ||||| ||| ||||| || || | Sbjct 3621 TGACGTTGTCGATGGTATCGGCGGGGTCAACCTCGAGGGTGATGGTCTTGCCCGTGAGGG 3562 Query 133642 TTTTTACGAAAATCTGCATGGCT 133664 | || |||||||||||||||||| Sbjct 3561 TCTTCACGAAAATCTGCATGGCT 3539 >seq10586 Length=11357 Score = 84.2 bits (92), Expect = 2e-11 Identities = 91/121 (75%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 133536 CGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTGAGCTGCTCAACC 133595 || || |||||||||||||||||||||||||| |||||| ||| | | || | Sbjct 11356 CGTTGTTGGTCGGGAGGGATGCCTTCCTTGTCTTGGATCTTGGCCTTCACATTGTCGATG 11297 Query 133596 GTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTTTTTACGAAAATC 133655 ||||| | | ||| || |||| ||||| ||| ||||| || || || || ||||||||| Sbjct 11296 GTGTCTGAAGACTCAACTTCGAGGGTGATGGTCTTGCCAGTGAGGGTCTTCACGAAAATC 11237 Query 133656 T 133656 | Sbjct 11236 T 11236 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483349936553480