Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eukaryota_20sp._20EH-2015_20[genbank_20GCA_5F001655205.1_202016-06- 03] 11,727 sequences; 48,996,813 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq3694 104 6e-17 seq1059 100 7e-16 >seq3694 Length=8734 Score = 104 bits (114), Expect = 6e-17 Identities = 98/125 (78%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 206254 AAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAG 206313 ||||| ||||| || |||||||| || || ||| | |||||||||||||| ||| Sbjct 3627 AAGATCCAAGACAAGGAAGGAATCCCTCCCGATCAACAACGTCTTATCTTCGCCGGCAAG 3686 Query 206314 CAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCAC 206373 ||| | |||||||| | ||| | |||| |||||| ||||||| |||||||| |||||| Sbjct 3687 CAGCTCGAAGATGGCCGTACTCTTTCCGACTACAACATCCAGAAGGAGTCTACCCTTCAC 3746 Query 206374 CTTGT 206378 ||||| Sbjct 3747 CTTGT 3751 Score = 100 bits (110), Expect = 7e-16 Identities = 78/93 (84%), Gaps = 0/93 (0%) Strand=Plus/Minus Query 204764 ACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTCCTTCCATCTTCC 204823 ||||||||||| |||||||| ||||||| || ||||| | | ||| | |||||||| Sbjct 3751 ACAAGGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTCGGAAAGAGTACGGCCATCTTCG 3692 Query 204824 AGCTGCTTTCCGGCGAAGATAAGCCGTTGTTGA 204856 |||||||| |||||||||||||| ||||||||| Sbjct 3691 AGCTGCTTGCCGGCGAAGATAAGACGTTGTTGA 3659 >seq1059 Length=4692 Score = 100 bits (110), Expect = 7e-16 Identities = 138/189 (73%), Gaps = 3/189 (2%) Strand=Plus/Plus Query 206180 TTTGCAAA-ACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTC 206238 |||| ||| || | || || ||||| || ||||||||||| ||| |||||| || | Sbjct 2135 TTTGTAAAGACCTTGACTGGCAAAACCATTACTTTGGAAGTTGAATCTTCTGATACTATT 2194 Query 206239 GA-ATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACT 206297 || | |||||| ||| || ||||| ||||||||||| || || |||||| | Sbjct 2195 GATAATGTTAAAGCCAAA-ATCCAAGACAAAGAAGGAATCCCACCTGATCAACAAAGATT 2253 Query 206298 TATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAA 206357 || || || |||||||| |||||||||||||| ||||| | ||||| || | ||||| Sbjct 2254 GATTTTTGCAGGAAAGCAATTGGAAGATGGAAGAACTTTATCTGATTATAATATTCAGAA 2313 Query 206358 AGAGTCTAC 206366 || || || Sbjct 2314 GGAATCAAC 2322 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181643228839567