Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eukaryota_20sp._20EH-2015_20[genbank_20GCA_5F001655205.1_202016-06- 03] 11,727 sequences; 48,996,813 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq1059 179 1e-39 seq3694 145 2e-29 seq10414 89.7 2e-12 seq8362 89.7 2e-12 seq9894 87.8 5e-12 seq9111 87.8 5e-12 seq6133 87.8 5e-12 >seq1059 Length=4692 Score = 179 bits (198), Expect = 1e-39 Identities = 177/229 (77%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 140511 CCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGAT 140570 |||||||| | | ||||| | ||| | || || || || |||||||||||||||||| Sbjct 2352 CCACCACGAAGGCGAAGAACCAAATGCAATGTTGATTCCTTCTGAATATTATAATCAGAT 2293 Query 140571 AATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGA 140630 || |||| |||||||| | ||| ||||| ||||| || | | ||| |||||||| || Sbjct 2292 AAAGTTCTTCCATCTTCCAATTGCTTTCCTGCAAAAATCAATCTTTGTTGATCAGGTGGG 2233 Query 140631 ATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACT 140690 ||||||||||| || || ||||| ||||| ||||||||||| | |||||| | ||||||| Sbjct 2232 ATTCCTTCTTTGTCTTGGATTTTGGCTTTAACATTATCAATAGTATCAGAAGATTCAACT 2173 Query 140691 TCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCATTA 140739 || | |||| || || || || | || |||||||| || ||||||| Sbjct 2172 TCCAAAGTAATGGTTTTGCCAGTCAAGGTCTTTACAAAGATTTGCATTA 2124 >seq3694 Length=8734 Score = 145 bits (160), Expect = 2e-29 Identities = 169/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 140510 ACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGA 140569 ||||||||| | | || ||||| ||||| |||||||| || || || || || || || Sbjct 3770 ACCACCACGAAGACGGAGCACAAGGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTCGGA 3711 Query 140570 TAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGG 140629 | || || |||||||| || || || || || ||||| |||||||| ||||| ||||| Sbjct 3710 AAGAGTACGGCCATCTTCGAGCTGCTTGCCGGCGAAGATAAGACGTTGTTGATCGGGAGG 3651 Query 140630 AATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAAC 140689 |||||||| || || || || ||||| || || || || || | ||| | || ||||| Sbjct 3650 GATTCCTTCCTTGTCTTGGATCTTAGCCTTGACGTTGTCGATGGTATCGGCGGGGTCAAC 3591 Query 140690 TTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || || || | ||||| || || || || || || ||||||||||| Sbjct 3590 CTCGAGGGTGATGGTCTTGCCCGTGAGGGTCTTCACGAAAATCTGCAT 3543 >seq10414 Length=18953 Score = 89.7 bits (98), Expect = 2e-12 Identities = 64/74 (86%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 235890 GGGGATGTAGATCAATTGGTAGATCGCTCGCTTTGCATGCGAGAGGTACCGGGATCAAAA 235949 |||||||||| |||| ||||||| ||||||||| |||||||||||| || |||||| | Sbjct 6171 GGGGATGTAGCTCAAGTGGTAGAGCGCTCGCTTAGCATGCGAGAGGCACTGGGATCGATG 6230 Query 235950 CCCAGCATCTCCAT 235963 |||||| ||||||| Sbjct 6231 CCCAGCTTCTCCAT 6244 >seq8362 Length=9750 Score = 89.7 bits (98), Expect = 2e-12 Identities = 64/74 (86%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 235890 GGGGATGTAGATCAATTGGTAGATCGCTCGCTTTGCATGCGAGAGGTACCGGGATCAAAA 235949 |||||||||| |||| ||||||| ||||||||| |||||||||||| || |||||| | Sbjct 8122 GGGGATGTAGCTCAAGTGGTAGAGCGCTCGCTTAGCATGCGAGAGGCACTGGGATCGATG 8181 Query 235950 CCCAGCATCTCCAT 235963 |||||| ||||||| Sbjct 8182 CCCAGCTTCTCCAT 8195 >seq9894 Length=3148 Score = 87.8 bits (96), Expect = 5e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 235890 GGGGATGTAGATCAATTGGTAGATCGCTCGCTTTGCATGCGAGAGGTACCGGGATCAAAA 235949 |||||||||| |||| ||||||| ||||||||| |||||||||||| || |||||| | Sbjct 1258 GGGGATGTAGCTCAAGTGGTAGAGCGCTCGCTTAGCATGCGAGAGGCACTGGGATCGATG 1199 Query 235950 CCCAGCATCTCCA 235962 |||||| |||||| Sbjct 1198 CCCAGCTTCTCCA 1186 >seq9111 Length=22379 Score = 87.8 bits (96), Expect = 5e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 235890 GGGGATGTAGATCAATTGGTAGATCGCTCGCTTTGCATGCGAGAGGTACCGGGATCAAAA 235949 |||||||||| |||| ||||||| ||||||||| |||||||||||| || |||||| | Sbjct 2137 GGGGATGTAGCTCAAGTGGTAGAGCGCTCGCTTAGCATGCGAGAGGCACTGGGATCGATG 2078 Query 235950 CCCAGCATCTCCA 235962 |||||| |||||| Sbjct 2077 CCCAGCTTCTCCA 2065 >seq6133 Length=2822 Score = 87.8 bits (96), Expect = 5e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 235890 GGGGATGTAGATCAATTGGTAGATCGCTCGCTTTGCATGCGAGAGGTACCGGGATCAAAA 235949 |||||||||| |||| ||||||| ||||||||| |||||||||||| || |||||| | Sbjct 200 GGGGATGTAGCTCAAGTGGTAGAGCGCTCGCTTAGCATGCGAGAGGCACTGGGATCGATG 259 Query 235950 CCCAGCATCTCCA 235962 |||||| |||||| Sbjct 260 CCCAGCTTCTCCA 272 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515026729711781