Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eukaryota_20sp._20EH-2015_20[genbank_20GCA_5F001655205.1_202016-06- 03] 11,727 sequences; 48,996,813 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq3694 86.0 4e-12 >seq3694 Length=8734 Score = 86.0 bits (94), Expect = 4e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || | |||||| | ||| | || || || |||||| || ||||| || || ||| Sbjct 3769 CCACCACGAAGACGGAGCACAAGGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTCGGAA 3710 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || || | ||||| || || || ||||| || || | ||| ||||| || || || Sbjct 3709 AGAGTACGGCCATCTTCGAGCTGCTTGCCGGCGAAGATAAGACGTTGTTGATCGGGAGGG 3650 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAAA-ATTGTGTCTTCGCTCTCCAC 34658 | ||| ||||||||| |||||| | || ||| | || || || || || || Sbjct 3649 ATTCCTTCCTTGTCTTGGATCTTA-GCCTTGACGTTGTCGATGGTATCGGCGGGGTCAAC 3591 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 || | ||| || || || || || | || ||||| |||||||||||| Sbjct 3590 CTCGAGGGTGATGGTCTTGCCCGTGAGGGTCTTCACGAAAATCTGCATG 3542 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314684617960391