Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eukaryota_20sp._20EH-2015_20[genbank_20GCA_5F001655205.1_202016-06- 03] 11,727 sequences; 48,996,813 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq1059 134 1e-26 seq3694 118 9e-22 >seq1059 Length=4692 Score = 134 bits (148), Expect = 1e-26 Identities = 176/244 (72%), Gaps = 0/244 (0%) Strand=Plus/Plus Query 26971 TTTTTAATTTATACGCCATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTC 27030 ||||||||| | | ||||| || |||||||| || |||| ||||| | |||||| Sbjct 2109 TTTTTAATTCAGGTGTAATGCAAATCTTTGTAAAGACCTTGACTGGCAAAACCATTACTT 2168 Query 27031 TTGAAGTGGAACCGTCCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAG 27090 | ||||| ||| | || || | ||||| | || ||| ||||| ||||||||||||| Sbjct 2169 TGGAAGTTGAATCTTCTGATACTATTGATAATGTTAAAGCCAAAATCCAAGACAAAGAAG 2228 Query 27091 GCATACCACCCGATCAACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGA 27150 | || ||||| |||||||| | || || | || || || ||||||||||| | | Sbjct 2229 GAATCCCACCTGATCAACAAAGATTGATTTTTGCAGGAAAGCAATTGGAAGATGGAAGAA 2288 Query 27151 CCGTTTCCGATTACAACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGG 27210 | | || ||||| || ||||| ||||| || || || ||||||||| | || | || | Sbjct 2289 CTTTATCTGATTATAATATTCAGAAGGAATCAACATTGCATTTGGTTCTTCGCCTTCGTG 2348 Query 27211 GTGG 27214 |||| Sbjct 2349 GTGG 2352 >seq3694 Length=8734 Score = 118 bits (130), Expect = 9e-22 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26985 GCCATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCG 27044 ||||||||||| || || || || || || |||||| | || || || || || || || Sbjct 3540 GCCATGCAGATTTTCGTGAAGACCCTCACGGGCAAGACCATCACCCTCGAGGTTGACCCC 3599 Query 27045 TCCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGAT 27104 |||| | || || | ||||| || || |||||||| ||||| || || |||||| Sbjct 3600 GCCGATACCATCGACAACGTCAAGGCTAAGATCCAAGACAAGGAAGGAATCCCTCCCGAT 3659 Query 27105 CAACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTAC 27164 ||||| ||| | || | ||||||||| || | ||||| | || ||||||| ||| Sbjct 3660 CAACAACGTCTTATCTTCGCCGGCAAGCAGCTCGAAGATGGCCGTACTCTTTCCGACTAC 3719 Query 27165 AACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 ||||| || |||||||| ||| | || | || | ||| | || ||||| Sbjct 3720 AACATCCAGAAGGAGTCTACCCTTCACCTTGTGCTCCGTCTTCGTGGTGG 3769 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434854646399040