Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eukaryota_20sp._20EH-2015_20[genbank_20GCA_5F001655205.1_202016-06- 03] 11,727 sequences; 48,996,813 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq3694 203 8e-47 seq1059 114 3e-20 seq10586 102 2e-16 seq5344 102 2e-16 >seq3694 Length=8734 Score = 203 bits (224), Expect = 8e-47 Identities = 178/222 (80%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 |||||| | || ||||||||||| || ||||| || |||||||| || || | ||| || Sbjct 3764 ACGAAGACGGAGCACAAGGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTCGGAAAGAGT 3705 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | |||||||| ||||||||||| ||||||||||| |||||||| || ||||| | ||| Sbjct 3704 ACGGCCATCTTCGAGCTGCTTGCCGGCGAAGATAAGACGTTGTTGATCGGGAGGGATTCC 3645 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 ||||||||| |||||||| || ||||| |||||||| || | | ||||||||||| Sbjct 3644 TTCCTTGTCTTGGATCTTAGCCTTGACGTTGTCGATGGTATCGGCGGGGTCAACCTCGAG 3585 Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||| ||||| |||||||| ||||| || || | |||||| Sbjct 3584 GGTGATGGTCTTGCCCGTGAGGGTCTTCACGAAAATCTGCAT 3543 >seq1059 Length=4692 Score = 114 bits (126), Expect = 3e-20 Identities = 144/198 (73%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 210918 GTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCT 210977 || || || || || || |||||||| | | || ||||||||||||| ||||| ||| Sbjct 2322 GTTGATTCCTTCTGAATATTATAATCAGATAAAGTTCTTCCATCTTCCAATTGCTTTCCT 2263 Query 210978 GCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTC 211037 || || || | | |||||| ||||| || | |||||| ||||| ||||| || ||| Sbjct 2262 GCAAAAATCAATCTTTGTTGATCAGGTGGGATTCCTTCTTTGTCTTGGATTTTGGCTTTA 2203 Query 211038 ACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTC 211097 || || || || || ||||| |||||| || | ||| || || || || || | ||| Sbjct 2202 ACATTATCAATAGTATCAGAAGATTCAACTTCCAAAGTAATGGTTTTGCCAGTCAAGGTC 2143 Query 211098 TTTACAAACACCTGCATT 211115 |||||||| | |||||| Sbjct 2142 TTTACAAAGATTTGCATT 2125 >seq10586 Length=11357 Score = 102 bits (112), Expect = 2e-16 Identities = 92/116 (79%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 210990 CGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATG 211049 ||||||||||| ||||| | ||||||||||| |||||||| ||||| || |||||| Sbjct 11356 CGTTGTTGGTCGGGAGGGATGCCTTCCTTGTCTTGGATCTTGGCCTTCACATTGTCGATG 11297 Query 211050 GTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAA 211105 ||||| || ||||| ||||| ||||| ||||| || ||||| ||||| || || Sbjct 11296 GTGTCTGAAGACTCAACTTCGAGGGTGATGGTCTTGCCAGTGAGGGTCTTCACGAA 11241 >seq5344 Length=321 Score = 102 bits (112), Expect = 2e-16 Identities = 92/116 (79%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 210990 CGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATG 211049 ||||||||||| ||||| | ||||||||||| |||||||| ||||| || ||||| Sbjct 2 CGTTGTTGGTCGGGAGGGATGCCTTCCTTGTCTTGGATCTTGGCCTTCACATTGTCGATT 61 Query 211050 GTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAA 211105 ||||| || |||||| ||||| ||||| ||||| || ||||| ||||| || || Sbjct 62 GTGTCTGAAGATTCAACTTCGAGGGTGATGGTCTTGCCAGTGAGGGTCTTCACGAA 117 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1158977834876355