Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eukaryota_20sp._20EH-2015_20[genbank_20GCA_5F001655205.1_202016-06- 03] 11,727 sequences; 48,996,813 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq1059 114 9e-21 seq3694 107 1e-18 >seq1059 Length=4692 Score = 114 bits (126), Expect = 9e-21 Identities = 154/212 (73%), Gaps = 2/212 (1%) Strand=Plus/Plus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 |||||| || || || || ||| | || || ||||| || ||| | |||||||| || | Sbjct 2125 AATGCAAATCTTTGTAAAGACCTTGACTGGCAAAACCATTACTTTGGAAGTTGAATCTTC 2184 Query 23670 GGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATC 23728 || ||| |||| ||| ||||| | |||| | ||||||||||| | || || |||| Sbjct 2185 TGATACTATTGATAATGTTAAAGCCAAAA-TCCAAGACAAAGAAGGAATCCCACCTGATC 2243 Query 23729 AACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACA 23788 |||| | || || ||||| || || ||| ||||||| | | | |||||| ||||| | Sbjct 2244 AACAAAGATTGATTTTTGCAGGAAAGCAATTGGAAGATGGAAGAACTTTATCTGATTATA 2303 Query 23789 ACATACAAAAAGAGTCCACATTACATTTAGTT 23820 | || || || || || ||||| ||||| ||| Sbjct 2304 ATATTCAGAAGGAATCAACATTGCATTTGGTT 2335 >seq3694 Length=8734 Score = 107 bits (118), Expect = 1e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||||||||| || ||||||||||| || || ||||| ||||| |||||| || | Sbjct 3543 ATGCAGATTTTCGTGAAGACCCTCACGGGCAAGACCATCACCCTCGAGGTTGACCCCGCC 3602 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 || || | || | | || || || ||||| ||||| | || || |||||| Sbjct 3603 GATACCATCGACAACGTCAAGGCTAAGATCCAAGACAAGGAAGGAATCCCTCCCGATCAA 3662 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 || ||| | || || |||||||| || || ||||| | || ||| | ||| |||||| Sbjct 3663 CAACGTCTTATCTTCGCCGGCAAGCAGCTCGAAGATGGCCGTACTCTTTCCGACTACAAC 3722 Query 23791 ATACAAAAAGAGTCCAC 23807 || || || ||||| || Sbjct 3723 ATCCAGAAGGAGTCTAC 3739 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337961290717316