Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eukaryota_20sp._20EH-2015_20[genbank_20GCA_5F001655205.1_202016-06- 03] 11,727 sequences; 48,996,813 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq3694 152 1e-31 seq1059 113 1e-19 seq10586 96.9 8e-15 seq5344 96.9 8e-15 >seq3694 Length=8734 Score = 152 bits (168), Expect = 1e-31 Identities = 167/222 (75%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||| | || |||||||| || || || || || |||| ||||| |||| | ||| Sbjct 3764 ACGAAGACGGAGCACAAGGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTCGGAAAGAGT 3705 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | |||||||| |||||||| || ||||||||||| |||||||| ||||| || || || Sbjct 3704 ACGGCCATCTTCGAGCTGCTTGCCGGCGAAGATAAGACGTTGTTGATCGGGAGGGATTCC 3645 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 |||||||||||||||||| ||| || |||||||| || | || || || || | Sbjct 3644 TTCCTTGTCTTGGATCTTAGCCTTGACGTTGTCGATGGTATCGGCGGGGTCAACCTCGAG 3585 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| ||||||||||| | || || | ||| | ||||| Sbjct 3584 GGTGATGGTCTTGCCCGTGAGGGTCTTCACGAAAATCTGCAT 3543 >seq1059 Length=4692 Score = 113 bits (124), Expect = 1e-19 Identities = 146/199 (73%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 225517 GTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCA 225576 || ||||| || || | ||| ||||| | |||||||| |||||||| | ||||| || Sbjct 2322 GTTGATTCCTTCTGAATATTATAATCAGATAAAGTTCTTCCATCTTCCAATTGCTTTCCT 2263 Query 225577 GCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGC-TT 225635 || || || | || |||||| || || || || ||||| ||||||||||| ||| || || Sbjct 2262 GCAAAAATCAATCTTTGTTGATCAGGTGGGATTCCTTCTTTGTCTTGGAT-TTTGGCTTT 2204 Query 225636 CACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGT 225695 ||| || || || || || | ||| || || || || || || ||||| ||||| || Sbjct 2203 AACATTATCAATAGTATCAGAAGATTCAACTTCCAAAGTAATGGTTTTGCCAGTCAAGGT 2144 Query 225696 TTTTATGAACACTTGCATT 225714 |||| || | ||||||| Sbjct 2143 CTTTACAAAGATTTGCATT 2125 >seq10586 Length=11357 Score = 96.9 bits (106), Expect = 8e-15 Identities = 82/101 (81%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 225589 CGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATG 225648 |||||||||||||| || || |||||||||||||||||||| ||||||| |||||| Sbjct 11356 CGTTGTTGGTCGGGAGGGATGCCTTCCTTGTCTTGGATCTTGGCCTTCACATTGTCGATG 11297 Query 225649 GTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGT 225689 |||||||| | || || || | ||||| |||||||| || Sbjct 11296 GTGTCTGAAGACTCAACTTCGAGGGTGATGGTCTTGCCAGT 11256 >seq5344 Length=321 Score = 96.9 bits (106), Expect = 8e-15 Identities = 82/101 (81%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 225589 CGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATG 225648 |||||||||||||| || || |||||||||||||||||||| ||||||| ||||| Sbjct 2 CGTTGTTGGTCGGGAGGGATGCCTTCCTTGTCTTGGATCTTGGCCTTCACATTGTCGATT 61 Query 225649 GTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGT 225689 |||||||| | ||| || || | ||||| |||||||| || Sbjct 62 GTGTCTGAAGATTCAACTTCGAGGGTGATGGTCTTGCCAGT 102 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192352019578538