Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eukaryota_20sp._20EH-2015_20[genbank_20GCA_5F001655205.1_202016-06- 03] 11,727 sequences; 48,996,813 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq3694 183 7e-41 seq1059 107 5e-18 seq10586 102 2e-16 seq5344 100 7e-16 >seq3694 Length=8734 Score = 183 bits (202), Expect = 7e-41 Identities = 164/206 (80%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || ||||||||||| || ||||| || || || |||||||||||||| || | | || Sbjct 3546 CAGATTTTCGTGAAGACCCTCACGGGCAAGACCATCACCCTCGAGGTTGACCCCGCCGAT 3605 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| |||||||| ||||| || ||||| |||||||||||||| || || ||| Sbjct 3606 ACCATCGACAACGTCAAGGCTAAGATCCAAGACAAGGAAGGAATCCCTCCCGATCAACAA 3665 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || |||||||||||||| || |||||||||||||| | |||||| |||| || ||| || Sbjct 3666 CGTCTTATCTTCGCCGGCAAGCAGCTCGAAGATGGCCGTACTCTTTCCGACTACAACATC 3725 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || || || || || || ||||| Sbjct 3726 CAGAAGGAGTCTACCCTTCACCTTGT 3751 >seq1059 Length=4692 Score = 107 bits (118), Expect = 5e-18 Identities = 148/207 (71%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| || || || || | || || ||||| || || | || || ||| || || Sbjct 2129 CAAATCTTTGTAAAGACCTTGACTGGCAAAACCATTACTTTGGAAGTTGAATCTTCTGAT 2188 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || || ||| || || || ||||||||||||||||| || || || ||| Sbjct 2189 ACTATTGATAATGTTAAAGCCAAAATCCAAGACAAAGAAGGAATCCCACCTGATCAACAA 2248 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | || || || ||||| || | ||||||||||| ||| | | |||||||| | Sbjct 2249 AGATTGATTTTTGCAGGAAAGCAATTGGAAGATGGAAGAACTTTATCTGATTATAATATT 2308 Query 178104 CAAAAAGAATCAACACTGCATCTTGTT 178130 || || ||||||||| ||||| | ||| Sbjct 2309 CAGAAGGAATCAACATTGCATTTGGTT 2335 >seq10586 Length=11357 Score = 102 bits (112), Expect = 2e-16 Identities = 94/119 (79%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 177927 ATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACC 177986 ||||||||||| || ||||| || || || ||||||||||| || || ||||||||| Sbjct 11238 ATTTTCGTGAAGACCCTCACTGGCAAGACCATCACCCTCGAAGTTGAGTCTTCAGACACC 11297 Query 177987 ATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACG 178045 ||||| || || || ||||| || ||||| ||||| |||||||| ||||| ||||| Sbjct 11298 ATCGACAATGTGAAGGCCAAGATCCAAGACAAGGAAGGCATCCCTCCCGACCAACAACG 11356 >seq5344 Length=321 Score = 100 bits (110), Expect = 7e-16 Identities = 99/128 (77%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 177918 ATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGC 177977 || ||| | || |||||||| || ||||| || || || ||||||||||| || ||| Sbjct 129 ATACTCTAGATCTTCGTGAAGACCCTCACTGGCAAGACCATCACCCTCGAAGTTGAATCT 70 Query 177978 TCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGAC 178037 |||||||| ||||| || || || ||||| || ||||| ||||| |||||||| ||| Sbjct 69 TCAGACACAATCGACAATGTGAAGGCCAAGATCCAAGACAAGGAAGGCATCCCTCCCGAC 10 Query 178038 CAGCAACG 178045 || ||||| Sbjct 9 CAACAACG 2 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203550336754038