Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eukaryota_20sp._20EH-2015_20[genbank_20GCA_5F001655205.1_202016-06- 03] 11,727 sequences; 48,996,813 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq3694 109 5e-19 >seq3694 Length=8734 Score = 109 bits (120), Expect = 5e-19 Identities = 163/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | ||| || || || || ||||||||| ||||| |||||||| Sbjct 3769 CCACCACGAAGACGGAGCACAAGGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTCGGAA 3710 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || || || | || |||||||||||||||||||| || || || ||||| || | || Sbjct 3709 AGAGTACGGCCATCTTCGAGCTGCTTGCCGGCGAAGATAAGACGTTGTTGATCGGGAGGG 3650 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | | ||||||| | || | || || | ||| | | | || ||| | || || Sbjct 3649 ATTCCTTCCTTGT-CTTGGATCTTAGCCTTGACGTTGTCGATGGTATCGGCGGGGTCAAC 3591 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 ||| | || || || || ||||| || ||||| ||||||||||||||| Sbjct 3590 CTCGAGGGTGATGGTCTTGCCCGTGAGGGTCTTCACGAAAATCTGCATG 3542 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462236232012400