Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fonticula_20alba_20[genbank_20GCA_5F000388065.2_202014-04-24] 214 sequences; 31,296,464 total letters Query= NC_001650.2 Length=184439 Score E Sequences producing significant alignments: (Bits) Value seq2 167 3e-36 >seq2 Length=3916072 Score = 167 bits (184), Expect = 3e-36 Identities = 243/342 (71%), Gaps = 6/342 (2%) Strand=Plus/Minus Query 145995 GAGCTGGTCCACGCCCTGCCCCCGGTAATCTGTCTTGGAGTCCACGTACGCGGCCCCGAA 146054 || |||||| ||||||| || ||| || || | || |||| |||| |||| || || Sbjct 3895902 GATCTGGTCGACGCCCTTGCCGGTGTAGTCGGTGTCGGCGTCCTTGTACTCGGCGCCAAA 3895843 Query 146055 GTGCCTCCACTGGAACCCGTAGACGGGCCCCAGGTCCCCGGGCTC---CCTGTGCCCCAG 146111 ||||| ||||||||| || || | |||||| |||||||| ||| || ||| ||| Sbjct 3895842 GTGCCGCCACTGGAAGCCATAAATGGGCCCAAGGTCCCC---CTCGCGCCGGTGGTGCAG 3895786 Query 146112 CCCGGCCCGGGCGAGGAAGTCCCGGGACCCGTTGGCGTCCCAGATCTTGACGCCCCTCGC 146171 ||| | | | ||||| || ||| || ||| |||||||||| | || ||| |||| Sbjct 3895785 CCCTCGGCTGTCAAGGAACTCGCGGCTGCCATTGCCGTCCCAGATGTGGATACCCTTCGC 3895726 Query 146172 GGAGAGCTCATTGGAGTCCGTGGACCCCCTGATGAACCAGAGCAGCTCTTCGAGGACCCC 146231 |||||||| ||| ||| ||| | | | || |||||||| |||||||||| || || Sbjct 3895725 CGAGAGCTCCTTGCCGTCGGTGCGCGCGCCGAGGAACCAGAACAGCTCTTCGGCCACACC 3895666 Query 146232 CCTCCAGAAGACCCTCTTGGTGGTCAGCAGGGGGAACTGGCCCCGCAGGGAGTACTTGGC 146291 | |||||| || | ||||||||||| ||||||||| | ||||||||||| || Sbjct 3895665 GCGCCAGAAAACACGCTTGGTGGTCAACAGGGGGAAGGAATCGCGCAGGGAGTAACGCGC 3895606 Query 146292 CTGGTCCCCGAAGACGGACAGGGTGCCCACGCCCGTCCTGTC 146333 | || |||| | ||| || || ||||| |||| ||| Sbjct 3895605 GCTGCAGCCAAAGAGAGCCAGTGTCCCGACGCCGGTCCGGTC 3895564 Score = 143 bits (158), Expect = 3e-29 Identities = 183/251 (73%), Gaps = 6/251 (2%) Strand=Plus/Minus Query 145672 AGCTGGAGCTTCAGGGGCTCCACGTGGTTGAGGTAGACGTGCGCGTCCCCCAGGACGTGG 145731 ||||| |||||| | || || ||||| ||| || || | ||| |||| || |||| Sbjct 3896361 AGCTGCTCCTTCAGCGCATCAACATGGTTCTTGTACACATGGGTGTCACCCATGATGTGG 3896302 Query 145732 ATGAAGTCCCCGGGCTCGAGGCCCGTGAGGTGGGCGACCATGTAGGTCAGCAGGGAGTAG 145791 || | || || ||| |||||| ||| ||||| | || | | |||||||| | ||| Sbjct 3896301 ATCAGCTCACCCGGCCGGAGGCCAGTGCAATGGGCAATCAGGCACGTCAGCAGCGCATAG 3896242 Query 145792 CTGGCTATGTTGAAGGGCACCCCCAGCCCCATGTCCCCCGAGCGCTGGTACAGCTGGCAG 145851 ||||| |||||||| ||||| || ||||| | || | |||||||||||| | ||||||| Sbjct 3896241 CTGGCGATGTTGAATGGCACACCGAGCCCAAGATCACACGAGCGCTGGTAGAACTGGCAG 3896182 Query 145852 GAGAGCT--CCCCGCCCG----CCACGTAGAACTGGCACAGGAGGTGGCAGGGCGGCAGG 145905 || |||| || ||| || |||||| |||||| || ||||||||||| || || Sbjct 3896181 GACAGCTCGCCACGCTCGATGTTCACGTAAAACTGGGCCATCAGGTGGCAGGGAGGGAGA 3896122 Query 145906 GCCATGGCGGG 145916 ||||| |||| Sbjct 3896121 GCCATCTCGGG 3896111 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 590075221544560