Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fonticula_20alba_20[genbank_20GCA_5F000388065.2_202014-04-24] 214 sequences; 31,296,464 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq7 529 2e-145 seq1 140 3e-28 seq3 114 1e-20 >seq7 Length=2157034 Score = 529 bits (586), Expect = 2e-145 Identities = 622/838 (74%), Gaps = 5/838 (1%) Strand=Plus/Plus Query 116594 AACCCCCGCCGGTTCGTGATTTTCCCCATACAATACCCGGACATGTGGCGCATGTACAAA 116653 |||||||| || ||||| | |||||||| | |||| || || |||| |||||||| Sbjct 326084 AACCCCCGGCGCTTCGTCCTCTTCCCCATCGAGTACCATGAGATTTGGCAGATGTACAAG 326143 Query 116654 AAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTGTCCAAGGACACGAGCGAC 116713 ||||||||||| || |||||||||| ||||||||||||||| ||| ||| | |||| Sbjct 326144 AAGGCCGAGGCCTCCTTCTGGACCGCCGAGGAGGTGGACCTCTCCCGCGACCTGGACGAC 326203 Query 116714 TGGGAGCGCT---TGAACGACAACGAGCGCCATTTCATCAAGCACGTGCTGGCCTTTTTC 116770 ||| | | ||| || ||||||||| | |||||| || |||||||| || ||| Sbjct 326204 TGGAACAACAAGCTGACCGCCAACGAGCGGTACTTCATCTCCCATGTGCTGGCGTTCTTC 326263 Query 116771 GCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGTTTCGCTCAGGAGGTGCAG 116830 ||||| || ||||| ||||| |||||||||||| | || ||| | |||||||||| Sbjct 326264 GCCGCGTCGGATGGCATTGTCAATGAGAATCTGGTCAACCGGTTCTCCTCGGAGGTGCAG 326323 Query 116831 GTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATGGAGAACGTGCACTCGGAA 116890 | |||||||| ||||||||||||||||| ||||||||||| |||||| | ||| || Sbjct 326324 ATCGCCGAGGCCCGGTGCTTCTACGGCTTCCAGATCGCCATCGAGAACATCCACAGCGAG 326383 Query 116891 ATGTATTCGACCCTCATCGACACGTACGTGCGCTCTTCGGAGGAGAAGCTCCGTTTGTTG 116950 ||||| ||| || || ||||| || ||||| | || ||| || | || Sbjct 326384 ATGTACTCGCTGCTGATTGACACCTATGTGCGGGATGTGGCCGAGCGCGACCACCTCTTC 326443 Query 116951 AACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGCCGAGTGGGCGCTGCGCTGGATC 117010 |||||||||||| || || |||||||| |||||||||| ||||| ||||||||||| Sbjct 326444 GGCGCCATCGAGACCATCCCCTGCGTCAAGAAGAAGGCCGACTGGGCCATGCGCTGGATC 326503 Query 117011 GCCGGCAGAG-AGGCCGCCTTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGT 117069 | || ||| | || |||||| | |||||||||||||||||| ||||| |||||| | Sbjct 326504 G-AGGACGAGTCGTCCACCTTCGCCACGCGCCTGGTGGCCTTCGCCGCCGTGGAGGGCAT 326562 Query 117070 CTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCATGCCCGG 117129 ||||| || ||| ||||||||||| || ||||| ||||| ||||||||||||||||| Sbjct 326563 TTTCTTCTCCGGCTCCTTCGCCGCCATCTTCTGGCTGAAGAAGCGCGGCCTCATGCCCGG 326622 Query 117130 CCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGGGTCTGCATTGCGACTTTGCCTG 117189 ||||| |||||||| |||||||||||| | |||||||| || || |||||||| || || Sbjct 326623 GCTGACCTTCAGCAATGAGCTCATCTCCCGTGACGAGGGGCTCCACTGCGACTTCGCGTG 326682 Query 117190 TTTGCTGTTCAAGCATTTGGTGCAGCGACCGAGCGCGGCGCGCGTCAGGGAGATCGTCAC 117249 |||| ||| ||| || || || |||| ||| | ||| | || ||| Sbjct 326683 CCTGCTCTTCTCGCACCTGAACTCCCGGCCCAGCGTGGCCACCATCACCGCCCTCATCAG 326742 Query 117250 CGACGCGGTCGCCATCGAGCAGCGCTTCCTCACCGAAGCGCTGCCGGTGCGTCTGCTGGG 117309 ||| ||||| | ||||||| || ||||||||||| || ||||| || || ||| | || Sbjct 326743 CGAGGCGGTGGTCATCGAGAAGGAGTTCCTCACCGAGGCCCTGCCCGTTCGCCTGATCGG 326802 Query 117310 ACTCAATTGCGAAACGATGTCGCAATACATCGAGTTCGTCGCCGACAGGCTGCTGCTCGA 117369 | || |||| |||| || ||||||||||| || |||||| | |||||| | || Sbjct 326803 CATGAACGGCGACCTCATGTGCCAGTACATCGAGTTTGTGGCCGACCGCCTGCTGGTGGA 326862 Query 117370 GCTGGTCGGCGCCAAGCACTACAACACGCCCAACCCGCTGGACTTTATGAACCTCATC 117427 ||| | | || | ||| ||||||| || ||||| | ||||| ||| || | ||| Sbjct 326863 GCTCGGCTGCCCGAAGGTCTACAACGCGGAGAACCCCTTCGACTTCATGGACATGATC 326920 >seq1 Length=4772237 Score = 140 bits (154), Expect = 3e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || ||||| ||||| ||||||||| |||| ||||| || | Sbjct 1125249 ATGCAGATCTTCGTCAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTCGAGCCCTCT 1125308 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 ||| | | | | |||||| || |||| ||||| ||||| |||||| | || ||| Sbjct 1125309 GACTCCATCGATGCCGTCAAGGCTAAGATTCAGGACAAGGAGGGTATCCCCCCTGATCAG 1125368 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || || || | ||| ||||| ||||| || |||| || |||||| ||||||||| Sbjct 1125369 CAGCGCCTGATTTTCGCCGGCAAGCAGCTCGAGGACGGCCGTACCCTCTCGGACTACAAC 1125428 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 ||||||||||| |||| || || || || | ||| || | || || Sbjct 1125429 ATCCAGAAGGACTCCACCCTCCACCTTGTCCTCCGCCTGCGTGGTGG 1125475 >seq3 Length=3619281 Score = 114 bits (126), Expect = 1e-20 Identities = 142/191 (74%), Gaps = 4/191 (2%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || || || || || ||||||||| | || || || || | Sbjct 1037527 ATGCAGATTTTCGTTAAGACCCTTACCGGTAAGACCATCACCCTTGAGGTTGAGCCCTCT 1037468 Query 40750 GACAGCGTGCAAACGC--TCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACC 40807 ||| || | | ||| |||||| || |||| ||||| ||||| |||||| | || | Sbjct 1037467 GACT-CGATCGA-CGCCGTCAAGGCTAAGATTCAGGACAAGGAGGGTATCCCCCCTGATC 1037410 Query 40808 AGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 40867 |||| || || || | ||| ||||| ||||| || || | ||||||||| |||||||| Sbjct 1037409 AGCAGCGCCTGATTTTCGCCGGCAAGCAGCTCGAGGATGGCCGCACCCTCTCCGACTACA 1037350 Query 40868 ACATCCAGAAG 40878 ||||||||||| Sbjct 1037349 ACATCCAGAAG 1037339 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515217821788640