Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fonticula_20alba_20[genbank_20GCA_5F000388065.2_202014-04-24] 214 sequences; 31,296,464 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq1 98.7 9e-16 seq3 95.1 1e-14 seq5 89.7 4e-13 >seq1 Length=4772237 Score = 98.7 bits (108), Expect = 9e-16 Identities = 144/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 118535 GTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTG 118594 ||||| || || || || || |||||||| || | || || ||||||||||| Sbjct 1125452 GTGGAGGGTGGAGTCCTTCTGGATGTTGTAGTCCGAGAGGGTACGGCCGTCCTCGAGCTG 1125393 Query 118595 TTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTT 118654 || || ||| | || || ||||||||||| || || || ||||||||||| ||| || Sbjct 1125392 CTTGCCGGCGAAAATCAGGCGCTGCTGATCAGGGGGGATACCCTCCTTGTCCTGAATCTT 1125333 Query 118655 TTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGT 118714 || || |||| || ||| | | ||||||||||| ||| | || |||||||| Sbjct 1125332 AGCCTTGACGGCATCGATGGAGTCAGAGGGCTCGACCTCGAGGGTGATGGTCTTGCCGGT 1125273 Query 118715 CAGAGTTTTTACAAAAATCTGCAT 118738 || || || || || |||||||| Sbjct 1125272 GAGGGTCTTGACGAAGATCTGCAT 1125249 >seq3 Length=3619281 Score = 95.1 bits (104), Expect = 1e-14 Identities = 135/190 (71%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 118551 TTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATG 118610 || || |||||||| ||| | ||||| |||||||||||| || || ||| | || Sbjct 1037340 TTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAAATC 1037399 Query 118611 AGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCG 118670 || ||||||||||| || || || ||||||||||| ||| || || || ||| Sbjct 1037400 AGGCGCTGCTGATCAGGGGGGATACCCTCCTTGTCCTGAATCTTAGCCTTGACGGCGTCG 1037459 Query 118671 ACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAA 118730 | | ||| | | ||| ||||| | ||| | || || ||||| || || || || ||| Sbjct 1037460 ATCGAGTCAGAGGGCTCAACCTCAAGGGTGATGGTCTTACCGGTAAGGGTCTTAACGAAA 1037519 Query 118731 ATCTGCATGG 118740 |||||||||| Sbjct 1037520 ATCTGCATGG 1037529 >seq5 Length=2316015 Score = 89.7 bits (98), Expect = 4e-13 Identities = 157/227 (69%), Gaps = 4/227 (2%) Strand=Plus/Plus Query 132878 GTCGACGGTAAACTTTGTGGCCTGAGCGGCGGGTTTTGTGCGCAAATAATACATGCCCGT 132937 ||| || || ||||| |||||| || ||||| || ||||||| ||||||||||| || Sbjct 1114959 GTCAACCGTGAACTTGATGGCCTCGGCCGCGGGCTTGGTGCGCAGGTAATACATGCCGGT 1115018 Query 132938 TTTCAGTTTTTTCTCCCACGCGTAAAAGTGTATGCTCGACACCACCG--AGTAAGTGGGT 132995 || || |||| ||| | || ||||| ||| | || |||| | ||||| Sbjct 1115019 CTTGAGGCCCTTCTTCCAGCCATAGAAGTGCATGGAAGTCA--ACCGGCTGGCGGTGGGC 1115076 Query 132996 TCGGCGACAAATAAATTCAGCGATTGACTCTGATCTATGAAAGGAGCACGGTCGGCGGCC 133055 ||| ||| || | ||||| || |||||||| ||||| | | | |||||||||||| Sbjct 1115077 TCGCCGATGAAGATGTTCAGGCTCTGGCTCTGATCGATGAAGGCACCCCGGTCGGCGGCC 1115136 Query 133056 ATGTTTATTATACACTTTGATTTGATCTCCCATGCCGTCTTGAAGAG 133102 |||| || || || |||||||||| | |||||| |||| Sbjct 1115137 ATGTCGATGATGGACCGCTGGCTGATCTCCCAGGTGGTCTTGTAGAG 1115183 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433829268516088