Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fonticula_20alba_20[genbank_20GCA_5F000388065.2_202014-04-24] 214 sequences; 31,296,464 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq1 93.3 3e-14 seq3 84.2 2e-11 >seq1 Length=4772237 Score = 93.3 bits (102), Expect = 3e-14 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 45133 GTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTG 45192 ||| || ||| |||||||| ||||||||||| || || |||| || || || Sbjct 1125452 GTGGAGGGTGGAGTCCTTCTGGATGTTGTAGTCCGAGAGGGTACGGCCGTCCTCGAGCTG 1125393 Query 45193 TTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTT 45252 || |||||||| |||| ||||| || || || || | ||||||||||||| ||| || Sbjct 1125392 CTTGCCGGCGAAAATCAGGCGCTGCTGATCAGGGGGGATACCCTCCTTGTCCTGAATCTT 1125333 Query 45253 TTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGT 45312 ||| || || | | | ||| ||| ||||| | ||| || |||||||| || Sbjct 1125332 AGCCTTGACGGCATCGATGGAGTCAGAGGGCTCGACCTCGAGGGTGATGGTCTTGCCGGT 1125273 Query 45313 CAGAGTCTTCACAAAGATTTGCAT 45336 || ||||| || ||||| ||||| Sbjct 1125272 GAGGGTCTTGACGAAGATCTGCAT 1125249 >seq3 Length=3619281 Score = 84.2 bits (92), Expect = 2e-11 Identities = 136/196 (69%), Gaps = 0/196 (0%) Strand=Plus/Plus Query 45148 CTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATAT 45207 |||||| |||||||||||| || ||| | || || || || || |||||||| || Sbjct 1037339 CTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAAAT 1037398 Query 45208 CAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGC 45267 || ||||| || || || || | ||||||||||||| ||| || ||| || || | Sbjct 1037399 CAGGCGCTGCTGATCAGGGGGGATACCCTCCTTGTCCTGAATCTTAGCCTTGACGGCGTC 1037458 Query 45268 CACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAA 45327 | ||| ||| ||||| | ||| || ||||| || || || ||||| || || Sbjct 1037459 GATCGAGTCAGAGGGCTCAACCTCAAGGGTGATGGTCTTACCGGTAAGGGTCTTAACGAA 1037518 Query 45328 GATTTGCATGTTGCCT 45343 || |||||| || || Sbjct 1037519 AATCTGCATGGTGACT 1037534 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395074169594494