Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fonticula_20alba_20[genbank_20GCA_5F000388065.2_202014-04-24] 214 sequences; 31,296,464 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq7 331 1e-85 seq5 143 4e-29 >seq7 Length=2157034 Score = 331 bits (366), Expect = 1e-85 Identities = 600/869 (69%), Gaps = 23/869 (3%) Strand=Plus/Plus Query 124994 CCTGTTTCCCATCAGGTATCATGACATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTT 125053 ||| || |||||| ||| ||||| |||||| | |||||||| ||||| |||||||||| Sbjct 326101 CCTCTTCCCCATCGAGTACCATGAGATTTGGCAGATGTACAAGAAGGCCGAGGCCTCCTT 326160 Query 125054 TTGGACGGTCGAAGAGGTCGATCTGTCCAAGGACCTGTACGATTGGGAGACTCGTTTGAC 125113 ||||| | ||| ||||| || || ||| |||||| |||| ||| | | |||| Sbjct 326161 CTGGACCGCCGAGGAGGTGGACCTCTCCCGCGACCTGGACGACTGGAACAACAAGCTGAC 326220 Query 125114 TGAAACTGAGCGAGAGTTTATATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAAT 125173 | | ||||| | || || || || | |||| ||||| |||| || ||||| || Sbjct 326221 CGCCAACGAGCGGTACTTCATCTCCCATGTGCTGGCGTTCTTCGCCGCGTCGGATGGCAT 326280 Query 125174 CGTCAACGACAATCTGTTGACACGATTCTCTCAAGAGTTGACCATTCCAGAGGTGTCGTG 125233 ||||| || |||||| | | || ||||| ||| || || | |||| ||| Sbjct 326281 TGTCAATGAGAATCTGGTCAACCGGTTCTCCTCGGAGGTGCAGATCGCCGAGGCCCGGTG 326340 Query 125234 CTTTTACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAATGTACTCTACACTGAT 125293 ||| ||||| ||||| ||| || |||||| | ||| || |||||||| ||||| Sbjct 326341 CTTCTACGGCTTCCAGATCGCCATCGAGAACATCCACAGCGAGATGTACTCGCTGCTGAT 326400 Query 125294 TGACATGTACATTCGCGAT----CCGCAACGTAAACACATGCTCTTTAACGCAATCGACA 125349 ||||| || | || ||| ||| | || | ||| ||||| ||| ||||| | Sbjct 326401 TGACACCTATGTGCGGGATGTGGCCG-AGCGCGACCAC---CTCTTCGGCGCCATCGAGA 326456 Query 125350 CGGTGCCGTCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGACAAGT 125409 | | || | | || ||||| | |||| || || |||||||| ||||| || Sbjct 326457 CCATCCCCTGCGTCAAGAAGAAGGCCGACTGGGCCATGCGCTGGATCGAGGACGAGTCGT 326516 Query 125410 CTTCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTA 125469 | | | |||| | |||||||| ||||||||||| |||||||| ||||| || || Sbjct 326517 CCACCTTCGCCACGCGCCTGGTGGCCTTCGCCGCCGTGGAGGGCATTTTCTTCTCCGGCT 326576 Query 125470 GTTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTA 125529 || || |||||||| ||||| ||||||||||| ||||||||||| ||||| ||| | Sbjct 326577 CCTTCGCCGCCATCTTCTGGCTGAAGAAGCGCGGCCTCATGCCCGGGCTGACCTTCAGCA 326636 Query 125530 ACGAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGCCATTCTACTGTT-TCGC 125588 | ||| | || || || |||||||| || ||||| ||||| || || || || |||| Sbjct 326637 ATGAGCTCATCTCCCGTGACGAGGGGCTCCACTGCGACTTCGCGTGCCTGCTCTTCTCGC 326696 Query 125589 AACT-ATCTGCGTCCCGAGTGCAGATCCAGCGATGAAAAGGTCATCAACATTGTAACCGA 125647 | || | | ||||| || |||||| | | ||| | | | | | ||| Sbjct 326697 ACCTGAAC----TCCCG---GC----CCAGCGTGGCCACCATCACCGCCCTCATCAGCGA 326745 Query 125648 TGCCGTGAGGATAGAACAAGAGTTTCTAACCGAATCCCTACCGGTCAGCATGATTGGCAT 125707 || ||| || || | ||||| || ||||| |||| || || || |||| ||||| Sbjct 326746 GGCGGTGGTCATCGAGAAGGAGTTCCTCACCGAGGCCCTGCCCGTTCGCCTGATCGGCAT 326805 Query 125708 GAACTGCAAGCTAATGTGCGAGTACATAGAGTTTGTGGCAGATCGTCTACTGTACGAG-T 125766 |||| || | || |||||| ||||||| ||||||||||| || || || ||| ||| | Sbjct 326806 GAACGGCGACCTCATGTGCCAGTACATCGAGTTTGTGGCCGACCGCCTGCTGGTGGAGCT 326865 Query 125767 TGATTGGCCGCAAGATTTACAACGCCAAGAATCCCTTTGATTTCATGACCAGCATATCAC 125826 | || ||| ||| | |||||||| |||| ||||| || |||||| || || | Sbjct 326866 CGGCTGCCCG-AAGGTCTACAACGCGGAGAACCCCTTCGACTTCATGGACATGATCAGTC 326924 Query 125827 TAGAGGGTAAGACCAACTTTTTCGAGAAG 125855 | |||| ||||||||||| ||||||||| Sbjct 326925 TCCAGGGCAAGACCAACTTCTTCGAGAAG 326953 >seq5 Length=2316015 Score = 143 bits (158), Expect = 4e-29 Identities = 346/520 (67%), Gaps = 8/520 (2%) Strand=Plus/Minus Query 96807 ACAAACGGCAACGCCAGTGGCCTAGTGCCAATGCTCAGAATGTACAATGCAATGTCACGA 96866 || || ||| || ||| || || || || ||||| | ||| |||||| | | || Sbjct 1116440 ACCAATGGCTACTCCAACGGGCTGGTCCCGATGCTGCGTGTGTTCAATGCCACCGCGCGT 1116381 Query 96867 TACGTTACACAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTGG 96926 ||||| ||||| ||||| || || || ||||| | ||| ||||| |||| || ||| Sbjct 1116380 TACGTCGACCAGGGTGGCAACAAGCGCCCCGGCGCGTTTGCCATCTACCTGGAGCCCTGG 1116321 Query 96927 CACGCGGACGTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCACGA 96986 |||||||| || ||| |||||| ||||||| ||| | ||| || ||| | || Sbjct 1116320 CACGCGGATGTGGAGTCCTTCATCGAGCTGCGCAAGAACACCGGCGCCGAGGAGACTCGT 1116261 Query 96987 GCCAGGGACTTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTCAACGAC 97046 ||| | ||| | || | ||| || |||||||| ||| | |||||||||||||| | | Sbjct 1116260 GCCCGTGACCTCTTCTTTGCCCTGTGGGTGCCGGATCTTTTCATGAAGCGCGTGGAGTCC 1116201 Query 97047 GGTGGCTACTGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGGGGC 97106 || ||| ||||| || | ||||| | | | || || ||| ||| |||| ||| Sbjct 1116200 GGCGGCGACTGGTCGCTGTTCTGCCCGCGCGAGGCCCCGGGCCTGCACGAGTGCTATGGC 1116141 Query 97107 GAAGAGTTTGAGGCCAAGTACACGGCCTACGAGCAAGAGGGCCGATACGTGAGACGAGTC 97166 || ||||| ||| || ||| | |||||| ||||| || | | | | | Sbjct 1116140 GAGGAGTTCGAGACCCTCTACCAGCGTTACGAGTCCGAGGGGCG-TGCCCGCAAGGTCAT 1116082 Query 97167 GATGCACGAG-AACTGTGG---AAGGCCATCGTGACGGCTCAGGTAGAGACTGGAACTCC 97222 || | | || |||||| ||| ||| || ||| ||||| ||||| || || || Sbjct 1116081 GAAGGCCCAGCTGCTGTGGCGCAAG---ATCATGGAGGCCCAGGTGGAGACCGGCACCCC 1116025 Query 97223 GTACATTCTCTACAAGGATACCGTGAATCGCAACAGCAACCAACGCCACTTGGGCACCAT 97282 | ||| | ||||||||| || || | || |||||| || | || ||||| Sbjct 1116024 CTTCATCATGTACAAGGATGCCTGCAACCAGAAGTCCAACCAGAAGAACCTCGGTACCAT 1115965 Query 97283 CAAGGGCTCCAATCTGTGCACGGAAATTGTAGAGTACGCC 97322 |||| |||| || || ||||| || || || ||||| || Sbjct 1115964 CAAGTGCTCGAACCTCTGCACCGAGATCGTCCAGTACACC 1115925 Score = 105 bits (116), Expect = 1e-17 Identities = 160/226 (71%), Gaps = 4/226 (2%) Strand=Plus/Minus Query 98038 TCTACAAGACTGTCTGGGAGATTCCGACCAA--GACGCTGATCGATATGGCTGCCGACAG 98095 |||||||||| ||||||||| | ||| | | | ||||| ||||| |||||| | Sbjct 1115182 TCTACAAGACCACCTGGGAGAT--CAGCCAGCGGTCCATCATCGACATGGCCGCCGACCG 1115125 Query 98096 AGGTGTCTACATTGACCAGAGTCAATCGTTCAATCTGTACGTTGCCGAGCCCACCTACAG 98155 |||| || ||| || ||||| || | || | | | | | |||||||||| ||| Sbjct 1115124 GGGTGCCTTCATCGATCAGAGCCAGAGCCTGAACATCTTCATCGGCGAGCCCACCGCCAG 1115065 Query 98156 TCGTATGACTTCGATACACTTTTACGCATGGAACAAGGGCCTCAAGACGGGCATGTACTA 98215 || ||||||| || ||||| || | ||||| |||||||||||||| |||||||| || Sbjct 1115064 CCGGTTGACTTCCATGCACTTCTATGGCTGGAAGAAGGGCCTCAAGACCGGCATGTATTA 1115005 Query 98216 TCTGAGAACAAAGTCGGCCACCAATGCCATACCATTTACGGTGGAC 98261 ||| | || ||| | || || | ||||| || ||||| ||| Sbjct 1115004 CCTGCGCACCAAGCCCGCGGCCGAGGCCATCAAGTTCACGGTTGAC 1114959 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741057217666640