Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fonticula_20alba_20[genbank_20GCA_5F000388065.2_202014-04-24] 214 sequences; 31,296,464 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq1 95.1 3e-14 seq3 91.5 3e-13 >seq1 Length=4772237 Score = 95.1 bits (104), Expect = 3e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || ||||| || || ||||| || || || | ||||| || || || || || Sbjct 1125445 GTGGAGTCCTTCTGGATGTTGTAGTCCGAGAGGGTACGGCCGTCCTCGAGCTGCTTGCCG 1125386 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 || ||||| || | ||| |||||||| || || || || || ||||||||||| || || Sbjct 1125385 GCGAAAATCAGGCGCTGCTGATCAGGGGGGATACCCTCCTTGTCCTGAATCTTAGCCTTG 1125326 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 || || | || || || || ||||| || || || ||||| || || || || Sbjct 1125325 ACGGCATCGATGGAGTCAGAGGGCTCGACCTCGAGGGTGATGGTCTTGCCGGTGAGGGTC 1125266 Query 104543 TTTACAAATATCTGCAT 104559 || || || |||||||| Sbjct 1125265 TTGACGAAGATCTGCAT 1125249 >seq3 Length=3619281 Score = 91.5 bits (100), Expect = 3e-13 Identities = 133/188 (71%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 104372 TTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATT 104431 ||||| || || ||||| || || || | || || || || || || || || ||||| Sbjct 1037340 TTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAAATC 1037399 Query 104432 AGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCT 104491 || | ||| |||||||| || || || || || ||||||||||| || || || || Sbjct 1037400 AGGCGCTGCTGATCAGGGGGGATACCCTCCTTGTCCTGAATCTTAGCCTTGACGGCGTCG 1037459 Query 104492 ACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAAT 104551 | | || || || ||||| || || || |||||||| ||||| || || || || Sbjct 1037460 ATCGAGTCAGAGGGCTCAACCTCAAGGGTGATGGTCTTACCGGTAAGGGTCTTAACGAAA 1037519 Query 104552 ATCTGCAT 104559 |||||||| Sbjct 1037520 ATCTGCAT 1037527 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151395243009512