Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fonticula_20alba_20[genbank_20GCA_5F000388065.2_202014-04-24] 214 sequences; 31,296,464 total letters Query= NC_005832.1 Length=106332 Score E Sequences producing significant alignments: (Bits) Value seq2 86.0 4e-12 >seq2 Length=3916072 Score = 86.0 bits (94), Expect = 4e-12 Identities = 115/150 (77%), Gaps = 10/150 (7%) Strand=Plus/Plus Query 44403 AGATGGGCGACAAGTTTGCGTCGT-TCACGGCGCAAAAGGGGACA-TGCGGAGCCGTCCT 44460 |||| |||||||||||||| ||| |||||| ||| ||||| || || | | | ||| Sbjct 915194 AGATCGGCGACAAGTTTGCCTCGCGTCACGG-GCAGAAGGGCACCGTGGGCATCA--CCT 915250 Query 44461 GACC--CAGGAGGACATGCCCTTCGACA-AAAACGGGGTGGTGCCCGACCTCATCATCAA 44517 ||| |||||||||||||||||| ||| | | || | ||||| ||||| |||||||| Sbjct 915251 -ACCGGCAGGAGGACATGCCCTTC-ACAGAGGAGGGCATTGTGCCGGACCTGATCATCAA 915308 Query 44518 CCCCCACGCCTTTCCCTCCAGGATGACCGT 44547 ||||| ||| |||| || | |||||||| Sbjct 915309 TCCCCATGCCATTCCTTCGCGAATGACCGT 915338 Score = 84.2 bits (92), Expect = 1e-11 Identities = 174/258 (67%), Gaps = 7/258 (3%) Strand=Plus/Minus Query 25401 GGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCTACGTGATCCAGGTAGACGTGAGCGTCT 25460 ||||| | || |||||| |||||||| || || || | | ||| || || | ||| Sbjct 3896373 GGCTCGCGCTTGAGCTGCTCCTTCAGCGCATCAACATGGTTCTTGTACACATGGGTGTCA 3896314 Query 25461 CCCAGAGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTAACGTAAGCCATCATGTACGTG 25520 |||| |||||| | ||| ||||| || || || | || |||| | |||| Sbjct 3896313 CCCATGATGTGGATCAGCTCACCCGGCCGGAGGCCAGTGCAATGGGCAATCAGGCACGTC 3896254 Query 25521 AGGAGAAAGTAGCTGGCGATGTTAAAGGGTACCCCGAACCCCATGTCCCCCCGACCTCTG 25580 || || |||||||||||||| || || || ||| | |||| | | | ||| | ||| Sbjct 3896253 AGCAGCGCATAGCTGGCGATGTTGAATGGCACACCG-AGCCCAAGATCACACGAGCGCTG 3896195 Query 25581 GTAGAGCTGACACGAGAGCTC------TTCGTCGCTCACGTAAAACTGACACATGGTGTA 25634 ||||| ||| || || ||||| ||| | ||||||||||||| ||| || Sbjct 3896194 GTAGAACTGGCAGGACAGCTCGCCACGCTCGATGTTCACGTAAAACTGGGCCATCAGGTG 3896135 Query 25635 GCACGGAGGAAGAGCTAT 25652 ||| ||||| ||||| || Sbjct 3896134 GCAGGGAGGGAGAGCCAT 3896117 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 340136712878622