Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fonticula_20alba_20[genbank_20GCA_5F000388065.2_202014-04-24] 214 sequences; 31,296,464 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq3 100 1e-16 seq11 98.7 5e-16 seq7 96.9 2e-15 seq6 95.1 6e-15 seq2 95.1 6e-15 seq1 95.1 6e-15 seq15 93.3 2e-14 seq4 93.3 2e-14 seq18 91.5 8e-14 seq13 91.5 8e-14 seq10 91.5 8e-14 seq8 91.5 8e-14 >seq3 Length=3619281 Score = 100 bits (110), Expect = 1e-16 Identities = 74/87 (85%), Gaps = 0/87 (0%) Strand=Plus/Plus Query 11443 TAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGA 11502 ||||||| ||| |||||| | |||||||||| ||||||||||||||||||||||| Sbjct 2409119 TAAAAAAGCAATGTGGCCCCAGCCAGGATCGAACTGACGACCTTCGCGTTATTAGCACGA 2409178 Query 11503 CGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||| ||||||||||||| ||||| Sbjct 2409179 CGCTCTAACCAACTGAGCTATGGGGCC 2409205 >seq11 Length=637296 Score = 98.7 bits (108), Expect = 5e-16 Identities = 73/86 (85%), Gaps = 0/86 (0%) Strand=Plus/Plus Query 11444 AAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503 |||||| ||| |||||| | |||||||||| |||||||||||||||||||||||| Sbjct 555799 AAAAAAGCAAGCTGGCCCCAGCCAGGATCGAACTGACGACCTTCGCGTTATTAGCACGAC 555858 Query 11504 GCTCTRACCAACTGAGCTAATGGGCC 11529 ||||| ||||||||||||| ||||| Sbjct 555859 GCTCTAACCAACTGAGCTATGGGGCC 555884 Score = 93.3 bits (102), Expect = 2e-14 Identities = 65/75 (87%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 |||||| | |||||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 309422 TGGCCCCAGCCAGGATCGAACTGACGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 309363 Query 11516 TGAGCTAATGGGCCG 11530 ||||||| |||||| Sbjct 309362 TGAGCTATGGGGCCG 309348 >seq7 Length=2157034 Score = 96.9 bits (106), Expect = 2e-15 Identities = 77/92 (84%), Gaps = 1/92 (1%) Strand=Plus/Minus Query 11445 AAAAATCAAAT-TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503 ||||| ||| | |||||| | |||||||||| |||||||||||||||||||||||| Sbjct 2125263 AAAAAGCAAGTCTGGCCCCAGCCAGGATCGAACTGACGACCTTCGCGTTATTAGCACGAC 2125204 Query 11504 GCTCTRACCAACTGAGCTAATGGGCCGTCGAC 11535 ||||| ||||||||||||| ||||| | ||| Sbjct 2125203 GCTCTAACCAACTGAGCTATGGGGCCATGGAC 2125172 Score = 91.5 bits (100), Expect = 8e-14 Identities = 64/74 (86%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 |||||| | |||||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 604788 TGGCCCCAGCCAGGATCGAACTGACGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 604729 Query 11516 TGAGCTAATGGGCC 11529 ||||||| ||||| Sbjct 604728 TGAGCTATGGGGCC 604715 Score = 91.5 bits (100), Expect = 8e-14 Identities = 66/77 (86%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 11453 AATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACC 11512 || |||||| | |||||||||| ||||||||||||||||||||||||||||| ||| Sbjct 2121559 AAATGGCCCCAGCCAGGATCGAACTGACGACCTTCGCGTTATTAGCACGACGCTCTAACC 2121500 Query 11513 AACTGAGCTAATGGGCC 11529 |||||||||| ||||| Sbjct 2121499 AACTGAGCTATGGGGCC 2121483 Score = 91.5 bits (100), Expect = 8e-14 Identities = 64/74 (86%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 |||||| | |||||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 2131640 TGGCCCCAGCCAGGATCGAACTGACGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 2131581 Query 11516 TGAGCTAATGGGCC 11529 ||||||| ||||| Sbjct 2131580 TGAGCTATGGGGCC 2131567 >seq6 Length=2529562 Score = 95.1 bits (104), Expect = 6e-15 Identities = 72/86 (84%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 11444 AAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503 ||||| ||| |||||| | |||||||||| |||||||||||||||||||||||| Sbjct 40713 AAAAAGGCAAGCTGGCCCCAGCCAGGATCGAACTGACGACCTTCGCGTTATTAGCACGAC 40654 Query 11504 GCTCTRACCAACTGAGCTAATGGGCC 11529 ||||| ||||||||||||| ||||| Sbjct 40653 GCTCTAACCAACTGAGCTATGGGGCC 40628 Score = 95.1 bits (104), Expect = 6e-15 Identities = 72/86 (84%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 11444 AAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503 ||||| ||| |||||| | |||||||||| |||||||||||||||||||||||| Sbjct 2270232 AAAAAGGCAAGCTGGCCCCAGCCAGGATCGAACTGACGACCTTCGCGTTATTAGCACGAC 2270173 Query 11504 GCTCTRACCAACTGAGCTAATGGGCC 11529 ||||| ||||||||||||| ||||| Sbjct 2270172 GCTCTAACCAACTGAGCTATGGGGCC 2270147 Score = 91.5 bits (100), Expect = 8e-14 Identities = 64/74 (86%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 |||||| | |||||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 2441425 TGGCCCCAGCCAGGATCGAACTGACGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 2441484 Query 11516 TGAGCTAATGGGCC 11529 ||||||| ||||| Sbjct 2441485 TGAGCTATGGGGCC 2441498 >seq2 Length=3916072 Score = 95.1 bits (104), Expect = 6e-15 Identities = 71/84 (85%), Gaps = 0/84 (0%) Strand=Plus/Plus Query 11446 AAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGC 11505 |||| || ||||||| | |||||||||| |||||||||||||||||||||||||| Sbjct 324066 AAAAGGAACTTGGCCCCAGCCAGGATCGAACTGACGACCTTCGCGTTATTAGCACGACGC 324125 Query 11506 TCTRACCAACTGAGCTAATGGGCC 11529 ||| ||||||||||||| ||||| Sbjct 324126 TCTAACCAACTGAGCTATGGGGCC 324149 Score = 95.1 bits (104), Expect = 6e-15 Identities = 71/84 (85%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 11446 AAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGC 11505 |||| ||| |||||| | |||||||||| |||||||||||||||||||||||||| Sbjct 359649 AAAAACAATGTGGCCCCAGCCAGGATCGAACTGACGACCTTCGCGTTATTAGCACGACGC 359590 Query 11506 TCTRACCAACTGAGCTAATGGGCC 11529 ||| ||||||||||||| ||||| Sbjct 359589 TCTAACCAACTGAGCTATGGGGCC 359566 Score = 93.3 bits (102), Expect = 2e-14 Identities = 73/87 (84%), Gaps = 1/87 (1%) Strand=Plus/Plus Query 11444 AAAAAATCAAAT-TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGA 11502 |||| || ||| |||||| | |||||||||| ||||||||||||||||||||||| Sbjct 339763 AAAAGATGAAAGCTGGCCCCAGCCAGGATCGAACTGACGACCTTCGCGTTATTAGCACGA 339822 Query 11503 CGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||| ||||||||||||| ||||| Sbjct 339823 CGCTCTAACCAACTGAGCTATGGGGCC 339849 Score = 93.3 bits (102), Expect = 2e-14 Identities = 65/75 (87%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514 ||||||| | |||||||||| ||||||||||||||||||||||||||||| ||||| Sbjct 3888091 TTGGCCCCAGCCAGGATCGAACTGACGACCTTCGCGTTATTAGCACGACGCTCTAACCAA 3888032 Query 11515 CTGAGCTAATGGGCC 11529 |||||||| ||||| Sbjct 3888031 CTGAGCTATGGGGCC 3888017 >seq1 Length=4772237 Score = 95.1 bits (104), Expect = 6e-15 Identities = 74/88 (84%), Gaps = 2/88 (2%) Strand=Plus/Minus Query 11445 AAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACG 11504 ||||| ||| |||||| | |||||||||| ||||||||||||||||||||||||| Sbjct 1390423 AAAAAGCAA--TGGCCCCAGCCAGGATCGAACTGACGACCTTCGCGTTATTAGCACGACG 1390366 Query 11505 CTCTRACCAACTGAGCTAATGGGCCGTC 11532 |||| ||||||||||||| ||||| || Sbjct 1390365 CTCTAACCAACTGAGCTATGGGGCCTTC 1390338 >seq15 Length=427202 Score = 93.3 bits (102), Expect = 2e-14 Identities = 71/85 (84%), Gaps = 0/85 (0%) Strand=Plus/Plus Query 11445 AAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACG 11504 |||| | || |||||| | |||||||||| ||||||||||||||||||||||||| Sbjct 62728 AAAAGTGAAGCTGGCCCCAGCCAGGATCGAACTGACGACCTTCGCGTTATTAGCACGACG 62787 Query 11505 CTCTRACCAACTGAGCTAATGGGCC 11529 |||| ||||||||||||| ||||| Sbjct 62788 CTCTAACCAACTGAGCTATGGGGCC 62812 Score = 93.3 bits (102), Expect = 2e-14 Identities = 65/75 (87%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 |||||| | |||||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 388542 TGGCCCCAGCCAGGATCGAACTGACGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 388601 Query 11516 TGAGCTAATGGGCCG 11530 ||||||| |||||| Sbjct 388602 TGAGCTATGGGGCCG 388616 >seq4 Length=3073782 Score = 93.3 bits (102), Expect = 2e-14 Identities = 71/85 (84%), Gaps = 0/85 (0%) Strand=Plus/Plus Query 11445 AAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACG 11504 ||||| || |||||| | |||||||||| ||||||||||||||||||||||||| Sbjct 1028312 AAAAAAGGAACTGGCCCCAGCCAGGATCGAACTGACGACCTTCGCGTTATTAGCACGACG 1028371 Query 11505 CTCTRACCAACTGAGCTAATGGGCC 11529 |||| ||||||||||||| ||||| Sbjct 1028372 CTCTAACCAACTGAGCTATGGGGCC 1028396 Score = 93.3 bits (102), Expect = 2e-14 Identities = 67/78 (86%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 11453 AATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACC 11512 || |||||| | |||||||||| ||||||||||||||||||||||||||||| ||| Sbjct 1831859 AAATGGCCCCAGCCAGGATCGAACTGACGACCTTCGCGTTATTAGCACGACGCTCTAACC 1831918 Query 11513 AACTGAGCTAATGGGCCG 11530 |||||||||| |||||| Sbjct 1831919 AACTGAGCTATGGGGCCG 1831936 Score = 93.3 bits (102), Expect = 2e-14 Identities = 67/78 (86%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 |||||| | |||||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 2800544 TGGCCCCAGCCAGGATCGAACTGACGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 2800485 Query 11516 TGAGCTAATGGGCCGTCG 11533 ||||||| ||||| ||| Sbjct 2800484 TGAGCTATGGGGCCCTCG 2800467 Score = 91.5 bits (100), Expect = 8e-14 Identities = 64/74 (86%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 |||||| | |||||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 1008647 TGGCCCCAGCCAGGATCGAACTGACGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 1008588 Query 11516 TGAGCTAATGGGCC 11529 ||||||| ||||| Sbjct 1008587 TGAGCTATGGGGCC 1008574 Score = 91.5 bits (100), Expect = 8e-14 Identities = 64/74 (86%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 |||||| | |||||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 1419012 TGGCCCCAGCCAGGATCGAACTGACGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 1418953 Query 11516 TGAGCTAATGGGCC 11529 ||||||| ||||| Sbjct 1418952 TGAGCTATGGGGCC 1418939 >seq18 Length=212751 Score = 91.5 bits (100), Expect = 8e-14 Identities = 64/74 (86%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 |||||| | |||||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 63672 TGGCCCCAGCCAGGATCGAACTGACGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 63613 Query 11516 TGAGCTAATGGGCC 11529 ||||||| ||||| Sbjct 63612 TGAGCTATGGGGCC 63599 >seq13 Length=464671 Score = 91.5 bits (100), Expect = 8e-14 Identities = 64/74 (86%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 |||||| | |||||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 419055 TGGCCCCAGCCAGGATCGAACTGACGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 419114 Query 11516 TGAGCTAATGGGCC 11529 ||||||| ||||| Sbjct 419115 TGAGCTATGGGGCC 419128 >seq10 Length=619120 Score = 91.5 bits (100), Expect = 8e-14 Identities = 66/77 (86%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 11453 AATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACC 11512 || |||||| | |||||||||| ||||||||||||||||||||||||||||| ||| Sbjct 24906 AAGTGGCCCCAGCCAGGATCGAACTGACGACCTTCGCGTTATTAGCACGACGCTCTAACC 24847 Query 11513 AACTGAGCTAATGGGCC 11529 |||||||||| ||||| Sbjct 24846 AACTGAGCTATGGGGCC 24830 >seq8 Length=1859391 Score = 91.5 bits (100), Expect = 8e-14 Identities = 66/77 (86%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 |||||| | |||||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 1760146 TGGCCCCAGCCAGGATCGAACTGACGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 1760205 Query 11516 TGAGCTAATGGGCCGTC 11532 ||||||| ||||| || Sbjct 1760206 TGAGCTATGGGGCCCTC 1760222 Score = 89.7 bits (98), Expect = 3e-13 Identities = 57/63 (90%), Gaps = 0/63 (0%) Strand=Plus/Minus Query 11467 AGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGG 11526 |||||||||| ||||||||||||||||||||||||||||| ||||||||||||| || Sbjct 1773601 AGGATCGAACTGACGACCTTCGCGTTATTAGCACGACGCTCTAACCAACTGAGCTATGGG 1773542 Query 11527 GCC 11529 ||| Sbjct 1773541 GCC 1773539 Lambda K H 0.639 0.410 0.921 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 261490517998264