Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fonticula_20alba_20[genbank_20GCA_5F000388065.2_202014-04-24] 214 sequences; 31,296,464 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq3 107 2e-18 seq1 100 3e-16 >seq3 Length=3619281 Score = 107 bits (118), Expect = 2e-18 Identities = 118/157 (75%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 94852 ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTT 94911 |||||| ||||| || ||| | || || | | |||||||| || || ||||| || || Sbjct 1037372 ATCCTCGAGCTGCTTGCCGGCGAAAATCAGGCGCTGCTGATCAGGGGGGATACCCTCCTT 1037431 Query 94912 GTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGAT 94971 ||| | ||| || |||||||||||| ||| | ||||| | | || || |||| ||||| Sbjct 1037432 GTCCTGAATCTTAGCCTTGACGGCGTCGATCGAGTCAGAGGGCTCAACCTCAAGGGTGAT 1037491 Query 94972 GGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATG 95008 ||| || || ||||| || || || || ||||||||| Sbjct 1037492 GGTCTTACCGGTAAGGGTCTTAACGAAAATCTGCATG 1037528 >seq1 Length=4772237 Score = 100 bits (110), Expect = 3e-16 Identities = 117/158 (74%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 ||||| ||||| || ||| | || || | | |||||||| || || ||||| || ||| Sbjct 1125403 TCCTCGAGCTGCTTGCCGGCGAAAATCAGGCGCTGCTGATCAGGGGGGATACCCTCCTTG 1125344 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972 || | ||| || ||||||||||| ||| | ||||| | | ||||| || | |||||| Sbjct 1125343 TCCTGAATCTTAGCCTTGACGGCATCGATGGAGTCAGAGGGCTCGACCTCGAGGGTGATG 1125284 Query 94973 GTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGCT 95010 || || || || || || || || ||||||||||| || Sbjct 1125283 GTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCATCCT 1125246 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448290000821040