Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fonticula_20alba_20[genbank_20GCA_5F000388065.2_202014-04-24] 214 sequences; 31,296,464 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq7 170 2e-37 seq1 98.7 9e-16 seq3 89.7 5e-13 >seq7 Length=2157034 Score = 170 bits (188), Expect = 2e-37 Identities = 342/505 (68%), Gaps = 19/505 (4%) Strand=Plus/Plus Query 46099 AAGAAAACCGACTGGGCGATGAAGTGGATCAACAGCAGCACCGCGACTTTCGCCGAGCGT 46158 ||||| |||||||||| ||| |||||| | | | | || |||||| ||| Sbjct 326474 AAGAAGGCCGACTGGGCCATGCGCTGGATCGAGGACGAGTCGTCCACCTTCGCCACGCGC 326533 Query 46159 ATGGTGGCCTTTGCGATTGTGGAGGGCGTCtttttttCTGGCAGTTTTGCCGCCATCTTT 46218 |||||||||| || ||||||||| | || || || ||| || ||||||||||| Sbjct 326534 CTGGTGGCCTTCGCCGCCGTGGAGGGCATTTTCTTCTCCGGCTCCTTCGCCGCCATCTTC 326593 Query 46219 TACATCAAAACCAAGGGCATCATGCCCGGCCTGACGTTTAGCAACGAGCTGATATCGCGC 46278 | | || | ||| |||||||||| ||||| || ||||| ||||| || || || Sbjct 326594 TGGCTGAAGAAGCGCGGCCTCATGCCCGGGCTGACCTTCAGCAATGAGCTCATCTCCCGT 326653 Query 46279 GACGAGGGCCTGCATACGGACTTTGCGTGTCT---CTACTATAAC----ACTCGCGTGCA 46331 |||||||| || || ||||| ||||| || || || || |||| || Sbjct 326654 GACGAGGGGCTCCACTGCGACTTCGCGTGCCTGCTCTTCTCGCACCTGAACTCCCG---- 326709 Query 46332 CGACAAGCTTGCGCCCGA-CACCGTGCTGAGCATGTTCAAGGAGGCGGTGGCCATTGAGA 46390 | | ||| || | | | ||||| || | ||| |||||||||| ||| |||| Sbjct 326710 -GCCCAGCGTGGCCACCATCACCGCCCTCA------TCAGCGAGGCGGTGGTCATCGAGA 326762 Query 46391 AGGAGTTTTTTACGGCCGCACTGCCCGCTGCCCTGCTGGGCATGAACGCACAGTCAATGT 46450 ||||||| | || | || ||||||| | |||| | |||||||||| | |||| Sbjct 326763 AGGAGTTCCTCACCGAGGCCCTGCCCGTTCGCCTGATCGGCATGAACGGCGACCTCATGT 326822 Query 46451 GCGACTACATCGAGTTTGTAGCGGACCGACTGCTCGTGCAGCTTCACCAGCCGAAGCATT 46510 || | |||||||||||||| || ||||| ||||| ||| |||| | |||||| | Sbjct 326823 GCCAGTACATCGAGTTTGTGGCCGACCGCCTGCTGGTGGAGCTCGGCTGCCCGAAGGTCT 326882 Query 46511 TTCACGCGCGCAATCCATTTGAGTTTATGAACAACATCTCCCTGGAGGGCAAAACTAATT 46570 ||||| || || || || || ||| ||| ||| || ||||||| || || | Sbjct 326883 ACAACGCGGAGAACCCCTTCGACTTCATGGACATGATCAGTCTCCAGGGCAAGACCAACT 326942 Query 46571 TTTTCGAAAAGCGCGTCGGCGAGTA 46595 | ||||| ||||||||||| || || Sbjct 326943 TCTTCGAGAAGCGCGTCGGTGACTA 326967 >seq1 Length=4772237 Score = 98.7 bits (108), Expect = 9e-16 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| |||| || || || | || | ||| || ||||| || |||||||| || Sbjct 1125475 CCACCACGCAGGCGGAGGACAAGGTGGAGGGTGGAGTCCTTCTGGATGTTGTAGTCCGAG 1125416 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||| || |||||| ||||||||||| ||| | || | |||||||| || || ||| Sbjct 1125415 AGGGTACGGCCGTCCTCGAGCTGCTTGCCGGCGAAAATCAGGCGCTGCTGATCAGGGGGG 1125356 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGC-TCCACAGTATCGGTGGACTCGAT 131186 || || || ||||| || || ||||| | || || | | || | || ||||| Sbjct 1125355 ATACCCTCCTTGTCCTGAATCTTAGCCTTGA-CGGCATCGATGGAGTCAGAGGGCTCGAC 1125297 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 |||| ||| | ||| || ||||| || || || ||||| |||||||| Sbjct 1125296 CTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 1125249 >seq3 Length=3619281 Score = 89.7 bits (98), Expect = 5e-13 Identities = 136/191 (71%), Gaps = 2/191 (1%) Strand=Plus/Plus Query 131046 CTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGAT 131105 ||| || |||||||| ||| | |||||| ||||| ||||||||||| ||| | || Sbjct 1037339 CTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAAAT 1037398 Query 131106 TAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGC-T 131164 | |||||||| || || ||||| || || ||||| || || ||||| | || | Sbjct 1037399 CAGGCGCTGCTGATCAGGGGGGATACCCTCCTTGTCCTGAATCTTAGCCTTGA-CGGCGT 1037457 Query 131165 CCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGA 131224 | | | || | || ||| | || | ||| | ||| |||||||| || || || |||| Sbjct 1037458 CGATCGAGTCAGAGGGCTCAACCTCAAGGGTGATGGTCTTACCGGTAAGGGTCTTAACGA 1037517 Query 131225 AAATCTGCATG 131235 ||||||||||| Sbjct 1037518 AAATCTGCATG 1037528 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 472011537365760