Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fonticula_20alba_20[genbank_20GCA_5F000388065.2_202014-04-24] 214 sequences; 31,296,464 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq7 120 6e-22 seq11 104 5e-17 >seq7 Length=2157034 Score = 120 bits (132), Expect = 6e-22 Identities = 556/861 (65%), Gaps = 35/861 (4%) Strand=Plus/Minus Query 251563 TCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGTG 251622 |||||||| || | |||||||| ||| ||| | |||||||||||||||||||| Sbjct 326949 TCGAAGAAGTTGGTCTTGCCCTGGAGACTGATCATGTCCATGAAGTCGAAGGGGTTCTCC 326890 Query 251623 GCATTGTACTGCTTGGGATGGCCAAGTGCTACGAAGATGCGGTCTGCCACAAACTCCAGA 251682 || ||||| ||| || ||| || | || | | |||||| ||||||||||| | Sbjct 326889 GCGTTGTAGACCTTCGGGCAGCCGAGCTCCACCAGCAGGCGGTCGGCCACAAACTCGATG 326830 Query 251683 TACTGTCCCATCAGTTCAGAGTTCATGCCAATCATACGACAAGGAATTGCCTCACAGATG 251742 ||||| | ||| || || ||||||||| |||| ||| || | ||||| || | Sbjct 326829 TACTGGCACATGAGGTCGCCGTTCATGCCGATCAGGCGAACGGGCAGGGCCTCGGTGAGG 326770 Query 251743 AATTCCTTTTCGTTGGCAACTGCCTCCTCCACAATTGCCTTCACCTGTGCCAGAGACAGC 251802 || ||||| ||| || | || ||||| | | || | | |||| || Sbjct 326769 AACTCCTTCTCGATGACCACCGCCTCGCTGATGAGGGCGGTGATGGTGGCCACGCTGGGC 326710 Query 251803 TTGTTCTCCAGCTTTGAGTACAGGA-GCTCGCCAAACTGTTG--GTGCAGACCCTCGTCG 251859 | | ||| | ||| | || | || ||| || || | ||| || |||||||| Sbjct 326709 CGGGAGTTCAGGTGCGAGAAGAGCAGGCACGCGAA---GTCGCAGTGGAGCCCCTCGTCA 326653 Query 251860 CGACTGATGAACTCGTTGGACAGACCCAGGCCAGGCATCACCCCACGGTTCCTGAGCCAG 251919 || ||||| ||| ||| | ||| || ||||| | || || ||| | |||||| Sbjct 326652 CGGGAGATGAGCTCATTGCTGAAGGTCAGCCCGGGCATGAGGCCGCGCTTCTTCAGCCAG 326593 Query 251920 AAGATTGCGCAAAAGGATCCAGAGAACAGCAGACCCTCGACACACACCCATGCAACAAGG 251979 ||||| ||| ||||| || ||||| | | ||||| || | | || || ||| Sbjct 326592 AAGATGGCGGCGAAGGAGCCGGAGAAGAAAATGCCCTCCACGGCGGCGAAGGCCACCAGG 326533 Query 251980 CGCTCAGCAA------ACGACTTGTCCTGCGA-CAAGAACTTCTGTGCCCATGCTGCCTT 252032 ||| || | |||||| ||||| ||| | || | | ||||| | ||||| Sbjct 326532 CGCGTGGCGAAGGTGGACGACTCGTCCT-CGATCCAGCGCAT---GGCCCAGTCGGCCTT 326477 Query 252033 CTTTCCAACCGCGGGGATTGTTTCGATTGCATCAAAGAGAGAGTTCCGCTCGGCATCGTC 252092 ||| || |||||| || ||||| || | ||||| || |||||||| | || Sbjct 326476 CTTCTTGACGCAGGGGATGGTCTCGATGGCGCCGAAGAGGTGGTCGCGCTCGGCCACATC 326417 Query 252093 CTCG---ATGAGCGCATCAAGCAGGAGAGAGTACATCTCCGAATGGATGGATTCGTTGAA 252149 | || || || | |||| ||| || ||||||||||| |||||| ||| || Sbjct 326416 C-CGCACAT-AG-GTGTCAATCAGCAGCGAGTACATCTCGCTGTGGATGTTCTCGATGGC 326360 Query 252150 CATCTGGTAAGCATAGAATAGACGCGCGGAAG-GGTCGGTGACTTCCGTGGAAAAGTTGT 252208 |||||| | | ||||| || || | | || | || |||| ||| || || Sbjct 326359 GATCTGGAAGCCGTAGAAGCACCGGGCCTCGGCGATCTG-CACCTCCGAGGAGAACCGGT 326301 Query 252209 TTGCAATGTTCTCCATCACCATGCCATCGCTGCCTGCAAAGAA-GCCAAGA-ATGGTCTT 252266 | | | ||||| | || |||||||| | || ||||| |||| | |||| Sbjct 326300 TGACCAGATTCTCATTGACAATGCCATCCGACGCGGCGAAGAACGCCAGCACATGG--GA 326243 Query 252267 GATGAAGTGACGCTCATCGTCGTTGAGCTTGTCACGCCAGTCGGCAATGTCCTGATTCAG 252326 |||||||| ||||| | | || | ||||||| ||||||| | | ||| | || Sbjct 326242 GATGAAGTACCGCTCGTTGGCGGTCAGCTTGTTGTTCCAGTCGTCCAGGTC--GCGGGAG 326185 Query 252327 AGG--AACTTCTTCCACCGTCCAGAATGTGGACACCGCCTTCTTGTACAT-TGCGAACAC 252383 ||| || || || | |||||||| | || | | |||||||||||||| ||| || | Sbjct 326184 AGGTCCACCTCCTCGGCGGTCCAGAAGGAGGCCTCGGCCTTCTTGTACATCTGCCAA-AT 326126 Query 252384 ATCAGGGTACTTGATTGGGAA 252404 ||| |||||| ||| ||||| Sbjct 326125 CTCATGGTACTCGATGGGGAA 326105 >seq11 Length=637296 Score = 104 bits (114), Expect = 5e-17 Identities = 363/558 (65%), Gaps = 14/558 (3%) Strand=Plus/Minus Query 218407 CTCATCGACCGATCTTTCAACAAGTCTCGTCCTGATGAGCGCAAGACCTGGCTGCTCGAC 218466 ||||||||| | ||||||||| || | |||||||||||| |||||| | | Sbjct 467155 CTCATCGACATGGCCTTCAACAAGCGCCGCGCCGATGAGCGCAAGGATTGGCTGGCCCGC 467096 Query 218467 TTCCAGCCCGGAAACCAGTTGGACCAGTCGAAGACCAACATCCCCGTCCCTGACTTCATC 218526 | | || || | | ||||||| ||| | | |||| || || | |||||| || Sbjct 467095 TGCGAGGAGGGCACCTTCCTGGACCACTCGGCGTCGGACATTTCCATCACCGACTTCGTC 467036 Query 218527 GACAAGGAGCTCATTCTTTTCTCGCGGTATGATGTGGAGCGTTCTATTCCCAGCGTGGTG 218586 |||||||||| | || ||||||| | || | || || |||||| | ||| Sbjct 467035 AACAAGGAGCTGGTGCTCTTCTCGCTGGCGGACAATGTCCGGTCCATTCCCTCGATTGTG 466976 Query 218587 GATGGCCTCAAGCCATCGCAGCGTAAGATCCTCTT-TGCCGCATTCAAGCGGAACCTGGT 218645 ||||| || ||||| || || ||||| ||||| ||| || |||||||| || || Sbjct 466975 GATGGGCTGAAGCCCGGCCACCGGAAGATTCTCTTCTGCTGC-TTCAAGCGCAATCTCCG 466917 Query 218646 TCAAGAAATTAAGGTCGCTCAGTTTTCTGGTTATGTATCCGAAATTTCTGGCTACCATCA 218705 | || | ||||| || ||| | || ||||| || || ||| | ||||| || Sbjct 466916 CCGCGAGGTGAAGGTGGCCCAGCTGGTGGGCTATGTGTCGGAGCATTCGGCCTACCTGCA 466857 Query 218706 CGGTGAGCAGAGTC----TGCAGGGTGCCATTGTAGGCATGGCACAGGACTATGTGGGCA 218761 ||| ||| | || | || | |||| | |||||||| ||||||||||| || Sbjct 466856 CGGCGAG--GCTTCCCTTTCCATGA--CCATCATCGGCATGGCCCAGGACTATGTCGGGT 466801 Query 218762 GTAACAACATGAACTTGCTGCTCCCCAACGGTCAGTTTGGTTCTCGTCTATTGGGTGGAA 218821 ||||| | || ||||| || ||| ||| ||| | ||||| || || | Sbjct 466800 CCAACAATGTCAATCTGCTGGAGCCGCGCGGCATGTTCGGTACCCGTCTGAATGGCGGGA 466741 Query 218822 AGGATAGTGCTTCTGCCAGGTATATCTTTACAAAGTTGTCGCCCGTGACGCGC--CAGGT 218879 ||||| || || ||| || || ||| || || | |||| | ||||| | | | Sbjct 466740 AGGATGCCGCCTC-GCCGCGT-TACATTTTCACCGTGCTGGCCCCGGCCGCGCGGCTGAT 466683 Query 218880 GTTCAATCAGGCCGATGATGTGCTCCTTAAGTATCTTGAGGACGATGGTTCTTCGATTGA 218939 ||| | |||||||||| | || || | || || ||||| ||||| || ||||| Sbjct 466682 CTTCCACGAGGCCGATGACGCCCTGCTGCACTACCTGGAGGATGATGGCACTCGCATTGA 466623 Query 218940 GCCCGAGTGGTATGTGCC 218957 ||| ||||||||||| Sbjct 466622 GCCTCGCTGGTATGTGCC 466605 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027833981799974