Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fonticula_20alba_20[genbank_20GCA_5F000388065.2_202014-04-24] 214 sequences; 31,296,464 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq7 266 6e-66 seq3 199 7e-46 seq1 167 4e-36 seq5 98.7 2e-15 >seq7 Length=2157034 Score = 266 bits (294), Expect = 6e-66 Identities = 630/939 (67%), Gaps = 27/939 (3%) Strand=Plus/Minus Query 9893 TTAGAAGTCTGCGTCAATTGCAAACACGTTGTCGTCG-----GCATT-CATGACGCCCGC 9946 ||||||||| ||||| | | ||| || |||| || || | ||||||||| || Sbjct 327034 TTAGAAGTCCGCGTCCAGGGTGAACTCGGTGTCCTCCTTGGAGCTGTGCATGACGCCGGC 326975 Query 9947 CTTCTGGTACTCCGATACCCGGCGCTCGAAGAAGTTGGACTTGCCCTCGAGGGAAATGAG 10006 ||||||||| || || || |||||||||||||| |||||||| ||| || | Sbjct 326974 CTTCTGGTAGTCACCGACGCGCTTCTCGAAGAAGTTGGTCTTGCCCTGGAGACTGATCAT 326915 Query 10007 CTCCATGAAGTCAAAGGGGTTCTCGGCGCCAAACTGCTTGGGGTAACCGAGTGCTGTGAA 10066 ||||||||||| ||||||||||| ||| | ||| ||| | ||||| | | Sbjct 326914 GTCCATGAAGTCGAAGGGGTTCTCCGCGTTGTAGACCTTCGGGCAGCCGAGCTCCACCAG 326855 Query 10067 AATGCGGTCAGCCACGAACTCGATGTACTGGCTCATCAGGTCCGAGTTCATGCCAATCAT 10126 | |||||| ||||| |||||||||||||||| ||| ||||| ||||||||| |||| Sbjct 326854 CAGGCGGTCGGCCACAAACTCGATGTACTGGCACATGAGGTCGCCGTTCATGCCGATCAG 326795 Query 10127 GCGGCAGGGGATGGCGTCGCAAATGAAGTCCTTTTCGTTGGCGACCGCTTC-CT-----C 10180 ||| ||| | ||| ||| | ||| ||||| ||| || | ||||| || || Sbjct 326794 GCGAACGGGCAGGGCCTCGGTGAGGAACTCCTTCTCGATGACCACCGCCTCGCTGATGAG 326735 Query 10181 GACGATGCTCTTTACCACGTCAAGGGACAGCTTGTTCTCGAGCTTCGAATACAGGA-GCT 10239 | || || | | ||||| || | | |||| || | ||| | || | || Sbjct 326734 GGCGGTGATGGTGGCCACG---CTGGGCCGGGAGTTC---AGGTGCGAGAAGAGCAGGCA 326681 Query 10240 CTCCAAACTGCTGGTGGAGGCCCTCGTCGCGGCTGATGAACTCGTTGGACAAACCCAGAC 10299 | | || || |||||| |||||||| ||| ||||| ||| ||| || ||| | Sbjct 326680 CGCGAAGTCGC-AGTGGAGCCCCTCGTCACGGGAGATGAGCTCATTGCTGAAGGTCAGCC 326622 Query 10300 CGGGCATGAGCCCCCGGTTGCGCAGCCAGAAAATGGCGCAGAACGACCCGGAGAACAGAA 10359 |||||||||| || || || ||||||||| |||||| ||| || |||||||| | || Sbjct 326621 CGGGCATGAGGCCGCGCTTCTTCAGCCAGAAGATGGCGGCGAAGGAGCCGGAGAAGAAAA 326562 Query 10360 GACCCTCCACGCACACCCAGGCGACGAGGCGCTCTGCGAAGGAG--CG-GTCGCGCGAAA 10416 ||||||||| | |||| || |||||| ||||||| | || ||| | | Sbjct 326561 TGCCCTCCACGGCGGCGAAGGCCACCAGGCGCGTGGCGAAGGTGGACGACTCGTCCTCGA 326502 Query 10417 AGTATTTCGAGGCCCACGCTGCCTTCTTTCCCACGGCAGGGATCGTCTCGATAGCCTCGA 10476 | | |||||| | |||||||| ||| ||||| |||||||| || ||| Sbjct 326501 TCCAGCGCATGGCCCAGTCGGCCTTCTTCTTGACGCAGGGGATGGTCTCGATGGCGCCGA 326442 Query 10477 AGAGCTTGTTACGCTCGGTCTCGT-CCTCA-ATAAGAGCATCAAGGAGCAGGGAGTATTG 10534 |||| | || ||||||| | | | || || ||| | | |||| ||||| ||||| Sbjct 326441 AGAGGTGGTCGCGCTCGGCCACATCCCGCACATAGGTG--TCAATCAGCAGCGAGTACAT 326384 Query 10535 CTCGCTGTGGACGCTCTCATTGTACCCCTGGTAAGCGTAGAACATACGTGCCGAGGGGTC 10594 ||||||||||| | |||| || |||| | ||||||| || ||| || | Sbjct 326383 CTCGCTGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAGAAGCACCGGGCCTCGGCGAT 326324 Query 10595 CGTGACTTCCTCGGCAAAGTTGTTGTTCAGGTTCTCCATCACCATGCCATCGCTGCCTGC 10654 | || ||| || || |||| ||| ||||| | || |||||||| | || Sbjct 326323 CTGCACCTCCGAGGAGAACCGGTTGACCAGATTCTCATTGACAATGCCATCCGACGCGGC 326264 Query 10655 AAAGAAGCCGAGGATGTGCTTGATGAAGTGGCGCTCATCATCGTTCAGTTTTTCACGCCA 10714 ||||| | || | || |||||||| ||||| | || |||| || | ||| Sbjct 326263 GAAGAACGCCAGCACATGGGAGATGAAGTACCGCTCGTTGGCGGTCAGCTTGTTGTTCCA 326204 Query 10715 GTCTACCACATCCTGGTTGAGCTGGACCTCCTCCACGGTCCAGAAAGTGGCAACGGCCTT 10774 ||| ||| || || ||| | |||||||| |||||||||| | ||| ||||||| Sbjct 326203 GTCGTCCAGGTCGCGGGAGAGGTCCACCTCCTCGGCGGTCCAGAAGGAGGCCTCGGCCTT 326144 Query 10775 CTTGTACATCTGGAAAATGTCGGGGTACCGGATGGGGAA 10813 |||||||||||| |||| || ||||| ||||||||| Sbjct 326143 CTTGTACATCTGCCAAATCTCATGGTACTCGATGGGGAA 326105 >seq3 Length=3619281 Score = 199 bits (220), Expect = 7e-46 Identities = 332/480 (69%), Gaps = 10/480 (2%) Strand=Plus/Plus Query 268223 ACAAAGTCCTCTGGCTCAGGAGACTGGAGCATTTTCCACATTGCTTCGACATAGTCCCGC 268282 ||| ||||||| |||| ||||||||| |||||| | ||||| ||||| || Sbjct 2746309 ACATAGTCCTCCGGCTTGTCGCTCTGGAGCATCAGCCACATGCCCTCGACGTAGTCACGA 2746368 Query 268283 GCATGGCCCCAATCGCGCTTTGCGTCCATGTTCCCGAGGAACAGGCATTTCTGCTTGCCG 268342 || ||||||||||||||| |||| || ||| || ||| |||||| | | ||| ||| Sbjct 2746369 GCGTGGCCCCAATCGCGCAGGGCGTTCAGGTTGCCCAGGCTCAGGCACTCCAGCTGGCCA 2746428 Query 268343 AGCTTCACGCGTGCAAGACCGCGAGTGATTTTTCGGGTCACGAACGTCTCGCCACGTAGA 268402 || | | | || | |||| |||| || ||||| ||||| || ||||| | Sbjct 2746429 AGGTGGATTTGGGCCACGGCGCGGCTGATCTTCCGGGTGACGAAGGTAAACCCACGCCGG 2746488 Query 268403 GGGCTCTCGTGGTTGAAGAGGATGCCGTTGCACGCGAACATGCCATATGCCTCACGGTAG 268462 |||||||| ||||||||||||||||| ||||| || ||||||| || ||||| |||||| Sbjct 2746489 GGGCTCTCATGGTTGAAGAGGATGCCATTGCAGGCATACATGCCGTAGGCCTCGCGGTAG 2746548 Query 268463 TTCACGACCGTCCAGTATGCAAACATCTTTGCAACTGCGTACGGAGAACGTGGATGGAAG 268522 ||| || ||||| | | ||| ||| || || ||||||| || || || | ||| Sbjct 2746549 TTCTTCACAATCCAGAACCCGTACAGCTTGGCCACGCCGTACGGCGACCGCGGGTAGAAA 2746608 Query 268523 GGCGTCGTGATCTTTTGAGGGATTTCTCGGACTTTGCCAAAGAGCTCGGAGGTCGATGCT 268582 || ||| | || ||||| || || || | ||| ||||||| ||||| || || Sbjct 2746609 GGGGTCTTCTCGGACTGGGGGATCTCCCGAACCTGGCCGTAGAGCTCCGAGGTGGAGGCC 2746668 Query 268583 TGGTAGA-----ACTTTGTTGTTTTTTCGAGACCGCAGATTCGGATTGCCTCGAGCAAAC 268637 ||||||| || |||| | | ||| |||| | ||||| || || || | | Sbjct 2746669 TGGTAGAAGCGGACCTTGTCGGT-----GAGGTTGCAGGTCCGGATGGCGTCCAGAAGGC 2746723 Query 268638 GAAGAGTTCCCATGCCATCCACGTCCGCTGTATACTCCGGCATCTCGAATGACACCTGGA 268697 | ||||| || | | ||||||| | | || ||||| | ||| || || ||||||| || Sbjct 2746724 GCAGAGTACCGACGGCATCCACCTGGCCGGTGTACTCGGCCATGTCAAAGGACACCTAGA 2746783 Score = 145 bits (160), Expect = 1e-29 Identities = 145/188 (77%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 68274 TTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATG 68333 || |||||||| || |||||||| || | ||||| || | |||||| |||||||| || Sbjct 1037340 TTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAAATC 1037399 Query 68334 AGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCG 68393 || | || || || || || || || |||||||| |||||||| ||||||||||| ||| Sbjct 1037400 AGGCGCTGCTGATCAGGGGGGATACCCTCCTTGTCCTGAATCTTAGCCTTGACGGCGTCG 1037459 Query 68394 ATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAAT 68453 || | ||| | | || || || | ||||||||| || || || |||||||| ||||| Sbjct 1037460 ATCGAGTCAGAGGGCTCAACCTCAAGGGTGATGGTCTTACCGGTAAGGGTCTTAACGAAA 1037519 Query 68454 ATCTGCAT 68461 |||||||| Sbjct 1037520 ATCTGCAT 1037527 >seq1 Length=4772237 Score = 167 bits (184), Expect = 4e-36 Identities = 173/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || ||||| | || | ||| || ||||| || || |||||||| || || ||| Sbjct 1125475 CCACCACGCAGGCGGAGGACAAGGTGGAGGGTGGAGTCCTTCTGGATGTTGTAGTCCGAG 1125416 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | || || || | |||||| |||||||| || || | || || || || || Sbjct 1125415 AGGGTACGGCCGTCCTCGAGCTGCTTGCCGGCGAAAATCAGGCGCTGCTGATCAGGGGGG 1125356 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || || |||||||| |||||||| ||||||||||| ||||||| ||| | | || || Sbjct 1125355 ATACCCTCCTTGTCCTGAATCTTAGCCTTGACGGCATCGATGGAGTCAGAGGGCTCGACC 1125296 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | ||||||||| || || ||||||||||||||||| |||||||| Sbjct 1125295 TCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 1125249 >seq5 Length=2316015 Score = 98.7 bits (108), Expect = 2e-15 Identities = 186/271 (69%), Gaps = 2/271 (1%) Strand=Plus/Plus Query 30795 ATGGCGTTTGCAGCAGGCTTGCTTCTGCAG-TAATACATAAGCGTCTTGAGACCCTTCTT 30853 ||||| | || || |||||| | | |||| |||||||| |||||||| |||||||| Sbjct 1114975 ATGGCCTCGGCCGCGGGCTTGGTGC-GCAGGTAATACATGCCGGTCTTGAGGCCCTTCTT 1115033 Query 30854 CCATGCATAGAACAGCATGGAAGACATTGACTTCATAGAGGGCGCTGCAACGAAGAGGTT 30913 ||| ||||||| ||||||||| || | | |||| | | | ||||| ||| Sbjct 1115034 CCAGCCATAGAAGTGCATGGAAGTCAACCGGCTGGCGGTGGGCTCGCCGATGAAGATGTT 1115093 Query 30914 CATGCTCTGTGTCTGGTCAACAAACGGACCGCGGTCTGCTGCAAGGTCAATGACGGTCTT 30973 || |||||| |||| || | || | ||| ||||| || || | ||| |||| || | Sbjct 1115094 CAGGCTCTGGCTCTGATCGATGAAGGCACCCCGGTCGGCGGCCATGTCGATGATGGACCG 1115153 Query 30974 CATAGACAGCTCCCATGCGGTCTTGTAGATTGCCTTGAGCTCAGGGTGGATGCCAATGAC 31033 | | |||||| | ||||||||||| ||||| || ||| | ||||| | || Sbjct 1115154 CTGGCTGATCTCCCAGGTGGTCTTGTAGAGGGCCTTCAGGTCATCGGGGATGGAAGGCAC 1115213 Query 31034 ACGTTGGATGGACCCCCCGTTGGCAATAATC 31064 || |||| ||| || ||| ||| || ||| Sbjct 1115214 CCGCTGGACGGAGCCACCGGCGGCGATGATC 1115244 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921619934660080