Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fonticula_20alba_20[genbank_20GCA_5F000388065.2_202014-04-24] 214 sequences; 31,296,464 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq5 506 4e-138 seq7 452 7e-122 >seq5 Length=2316015 Score = 506 bits (560), Expect = 4e-138 Identities = 1180/1768 (67%), Gaps = 45/1768 (3%) Strand=Plus/Plus Query 243741 TGAACTGGACGGGTGCGACGGCGGCCTTGGTCCTCAGGTAGTACATGCCGGTCTTGAGTC 243800 |||||| || || || | |||| |||||| | |||||| ||||||||||||||||| | Sbjct 1114967 TGAACTTGATGGCCTCGGCCGCGGGCTTGGTGCGCAGGTAATACATGCCGGTCTTGAGGC 1115026 Query 243801 CACTGGACCAGGCGTGGAGGTGCATGGCCGTCAGCTTCTTCATCTTGAGCTTTGGGTCGT 243860 | | |||| | | || |||||||| |||| | | || | | | ||| Sbjct 1115027 CCTTCTTCCAGCCATAGAAGTGCATGGAAGTCAAC-----CGGCTGGCGGT--GGG---- 1115075 Query 243861 CCTCGCACAGAAAGAGGTTGAGGGACTGGCTCTGGTCGACGAAGGGCGCCCGCTCTGCGG 243920 ||||| | |||| ||| ||| ||||||||| |||| ||||| |||| || |||| Sbjct 1115076 -CTCGCCGATGAAGATGTTCAGGCTCTGGCTCTGATCGATGAAGGCACCCCGGTCGGCGG 1115134 Query 243921 CCATGGTGATGAGGTCCTTCTGAGATATCTCATACGCCGTCTTGTAGATGGGCTTGAGGT 243980 ||||| ||||| | | ||| ||||| | | |||||||||| || ||| |||| Sbjct 1115135 CCATGTCGATGATGGACCGCTGGCTGATCTCCCAGGTGGTCTTGTAGAGGGCCTTCAGGT 1115194 Query 243981 GCTCGGGGAACCCTTCGATGTTCTGCACCGAGCCCTTGTGGACGATGAGCTGGGTGCGCA 244040 ||||||| | ||| || ||||| | | |||||| | || | Sbjct 1115195 CATCGGGGATGGAAGGCACCCGCTGGACGGAGCCACCGGCGGCGATGATCATCTGCCGGA 1115254 Query 244041 TGTTATCGTTCCACAGGCCCAAGCGCTCCAGCGCCTCGACCAGGTGCCTGTTCACCACCT 244100 || || ||||||| || | ||| || ||| || |||||| ||| |||| || Sbjct 1115255 CATTGTCATTCCACACCCCAATGCGAATGAGGTCCTTGATCAGGTGGGGGTTGACCATCT 1115314 Query 244101 GAAACTCTCCCGACAGCACGCGGCGCTGGTAGAGGTTGCTGCTGAGCGGCTCGATGCTCT 244160 | ||||| || |||||||| || || |||| |||| | || |||||||||| || Sbjct 1115315 GGAACTCCCCGGACAGCACACGACGGACATAGATGTTGGAGGTGTAGGGCTCGATGCACT 1115374 Query 244161 CCGTGTTGCCCAGTATCTGCGCCGTGCTCGCAGTCGGCATGGGCGACACCAGCAGACTGT 244220 | || ||| || ||||||| ||| || |||||||| || | |||||| || || Sbjct 1115375 CATTGAAGCCGAGGATCTGCGAGGTGGAGGCCGTCGGCATCGGGGCCACCAGGAGCGAGT 1115434 Query 244221 TCCTCACGCCGTGCCTCTGGATGCGGAGTCTGAGCTCGTTCCAGTCCCACATGCCCGAGA 244280 | | || ||| || | ||||| | || || ||| |||||| | | ||| Sbjct 1115435 TACGCAGGCCATGACGAGCAATGCGCTCCTTCAGGCCGGCCCAATCCCACCGGTCGGAGG 1115494 Query 244281 GGTCCTCGCGTTTGAGGCCCCACATGTCAAACTGCAGCAGCCCCTTGCTGACG--GGGCT 244338 || | | | |||||| ||| ||||| ||| | || || || | ||| Sbjct 1115495 GGGTCACAC---------CCCACAGGTCGAACTGGAGCTGGCCG--GCCGAAGCCGGGGA 1115543 Query 244339 GCCCTCGTAGGTCGGGTAGGGACCGTCGCGCTGGGCCAGCTTACAGCTCTCGTCGAGGGC 244398 |||||||| | | || || ||| |||||| |||| || ||| | | |||| || Sbjct 1115544 CCCCTCGTACGAGGCATACGGGCCGACGCGCTCGGCCGTCTGGCAGGACGCCTCGACCGC 1115603 Query 244399 GGCGTAGTAGATGGTCTCGAAGATCATCTTGTTCATGTCGCGGGCCTTGCCGCAGGTGAA 244458 ||| ||||||||||||||||||| |||||| | | | || |||| || ||| Sbjct 1115604 CGCGAAGTAGATGGTCTCGAAGATGGCCTTGTTGAGGGCACGCGCCTCCGGGCTCTCGAA 1115663 Query 244459 GGGGATGCCCATCATCATGAAGACGTCGGCCAGTCCCTGCACGCCGATGCCGATGGGTCT 244518 || |||| |||||| ||||| | |||||||| ||||| || |||||||| || || | Sbjct 1115664 CGGCATGCGCATCATGATGAACAGATCGGCCAGGCCCTGGACACCGATGCCAATCGGCCG 1115723 Query 244519 GTGTCGCTTGTTGGAGCGCATGGCTTCGGGCACGGGGTAAAAGTTGCCGTCGATCACCTT 244578 ||| || ||||||| | ||| || ||| ||||| ||||| |||||| | Sbjct 1115724 GTGACGGAGGTTGGAGTTCCGGGCCTCCTCCACCGGGTAGTAGTTGATGTCGATGATGCG 1115783 Query 244579 GTTGAGGTTGCGGGTGATCATGCGGACGACGTCGGCCAGCAGCTGAAAGTCGTACTCGTA 244638 | ||||| |||| | | | | |||| | |||| || |||||| ||| Sbjct 1115784 ATCCAGGTTCCGGGCCACGACCCCGGTGACGGTGCGCAGCTTCTCAAAGTCATACGACAT 1115843 Query 244639 GGGATC---CTCGGCGATGGTGATCCTCACAAACTCGTTGAGGGCGACGCTGGCCAGGTT 244695 || | ||| | | |||| | ||||| ||||| | | ||||||||| Sbjct 1115844 GGCCCCGGTCTCCGGGCAGGTGTGGAT---AAACTGCGGCAGGGCAATGGAGGCCAGGTT 1115900 Query 244696 GCAGACGGCCACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGTGCAGAGGTTACTGCA 244755 ||| ||||||||||| || | ||||||||||||| ||||||||||||||||| ||| Sbjct 1115901 GCACACGGCCACCTCGTCGTTGCTGGTGTACTGGACGATCTCGGTGCAGAGGTTCGAGCA 1115960 Query 244756 CTTGATGGTGCCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGCGTCCTTGTAGAGCAT 244815 ||||||||| || |||| || || |||||||| ||||||||| |||||||| | || Sbjct 1115961 CTTGATGGTACCGAGGTTCTTCTGGTTGGACTTCTGGTTGCAGGCATCCTTGTACATGAT 1116020 Query 244816 GAAGGGCCCCCCGGTCTCGAGCTGGGCGACGAGGACGCTGTTCCAGAGGTCCCTAGCCTT 244875 |||||| |||||||| | |||||| | | || || ||| || | ||||| Sbjct 1116021 GAAGGGGGTGCCGGTCTCCACCTGGGCCTCCATGATCTTGCGCCACAGCAGCTGGGCCTT 1116080 Query 244876 GACCGTCCTGCGAGCCTTGCCCTCTGCCTCGTAGCGGGTGTACAGGGCCTCGAACTCGGG 244935 | | |||| || ||||| | |||||| || ||| |||| ||||||||| Sbjct 1116081 CATGACCTTGCGGGCACGCCCCTCGGACTCGTAACGCTGGTAGAGGGTCTCGAACTCCTC 1116140 Query 244936 GCCCCAGACCTCGTCTAGG-CCGGGGCACGACGCCGGGCACATGAGACTCCACTCGCCGC 244994 ||| || ||||| ||| ||||||| || |||||| | || ||| ||||||| Sbjct 1116141 GCCATAGCACTCGTGCAGGCCCGGGGCCTCGCG-CGGGCAGAACAGCGACCAGTCGCCGC 1116199 Query 244995 CGTCCTTGACCCTCTGCATGAAGAGGTCGGGGATCCAGAGGGCCTGGAAGAGGTCCCTGG 245054 || || || | || |||||| || || || | ||| ||||| ||||||||| | || Sbjct 1116200 CGGACTCCACGCGCTTCATGAAAAGATCCGGCACCCACAGGGCAAAGAAGAGGTCACGGG 1116259 Query 245055 TCCTCTGCTCGTCCGAGCCAGTGTTCTTCCTCAGCTCCAAAAAGTCAAAGACGTCGACGT 245114 | ||| || | ||| |||||||| | |||||| | ||| || || ||| Sbjct 1116260 CACGAGTCTCCTCGGCGCCGGTGTTCTTGCGCAGCTCGATGAAGGACTCCACATCCGCGT 1116319 Query 245115 GCCAGGGCTCCATGTAGACAGCGAGGGCGCCGGGCCGCTTGTTGCCTCCCTGGTCCACCA 245174 |||||||||||| ||||| || | |||||||| ||||||||||| |||||||| || Sbjct 1116320 GCCAGGGCTCCAGGTAGATGGCAAACGCGCCGGGGCGCTTGTTGCCACCCTGGTCGACGT 1116379 Query 245175 TCCTCTCGAGCGCGTTGAAGATGCGCAGGGTAGGCACTATGCCGTTAGAGTGGCCGTTGG 245234 | | || || ||||| | ||||| | || || | ||||| |||| ||| |||| Sbjct 1116380 AACGCGCGGTGGCATTGAACACACGCAGCATCGGGACCAGCCCGTTGGAGTAGCCATTGG 1116439 Query 245235 TGCCCTTGATGTAGGCGCCCTTGCCCCTGAGGTTGCTGATGGACAT----GCCTAGTCCG 245290 |||| ||||||| || || | | || |||| || |||| ||| | ||| Sbjct 1116440 TGCCGGCAATGTAGGACCCGGTGGCGCGGATGTTG----TGAACATTGAGGCCGATGCCG 1116495 Query 245291 CCGGCGTGCTTGGAGATGAGGGCGCAGCTCTTG-ATGGTGTCTGCTATGCCCTCCATGCT 245349 |||||| |||||| ||||||||||| || | | |||||| ||||| || || Sbjct 1116496 CCGGCGGTCTTGGAAATGAGGGCGCA-CTGGCGCAGGGTGTCGTAAATGCCATCAATCGA 1116554 Query 245350 GTCCGACTTCATGTTGAGCAGAAAGCAGGAGGACAGCTGGGGCTTGGG-GCTGCACGAGT 245408 ||| ||||||| ||||||| ||||| || |||||||| ||| ||| | ||| ||| Sbjct 1116555 GTCGTCCTTCATGGTGAGCAGGAAGCAAGACGACAGCTGCGGCCGGGGAGACCCAC-AGT 1116613 Query 245409 TGAACAGAGTGGGGCTGGCGTGGGTAAAGTAGCGGCTCGAGAGGAACCCGTACGTCTGGA 245468 |||| || || || ||| || || |||||||| || | | || |||| |||| | Sbjct 1116614 TGAAGAGGGTCGGCGAGGCATGCGTGAAGTAGCGCTGGGACATGTACTCGTAGGTCTCCA 1116673 Query 245469 GCAGAGCGTCGATGTTGTCGCCGTGGAT 245496 | ||| ||||| | ||| ||||| Sbjct 1116674 GGGCGGCGGGGATGTCGCTGCCATGGAT 1116701 >seq7 Length=2157034 Score = 452 bits (500), Expect = 7e-122 Identities = 629/872 (72%), Gaps = 22/872 (3%) Strand=Plus/Plus Query 42285 ATCGAGCACCAGGACATCTGGTCCATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGCC 42344 |||||| |||| || || ||| |||||||||||||| || |||| |||||||||| Sbjct 326111 ATCGAGTACCATGAGATTTGGCAGATGTACAAGAAGGCCGAGGCCTCCTTCTGGACCGCC 326170 Query 42345 GAGGAGATTGACCTGGCCAAGGACACGGCCGGCTGGGAGT-CA--CTGTCTGAGAACGAA 42401 |||||| | ||||| || ||| || || |||| | || ||| | | ||||| Sbjct 326171 GAGGAGGTGGACCTCTCCCGCGACCTGGACGACTGGAACAACAAGCTGACCGCCAACGAG 326230 Query 42402 AAGTTTTTCCTCAAAAACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAG 42461 || ||| || | | ||||| ||||||||||| || || ||||| ||||||||| Sbjct 326231 CGGTACTTCATCTCCCATGTGCTGGCGTTCTTCGCCGCGTCGGATGGCATTGTCAATGAG 326290 Query 42462 AACCTGGCCACCAGGTTCATGAAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGC 42521 || |||| || | ||||| ||||||||| | ||||| || |||||||||||| Sbjct 326291 AATCTGGTCAACCGGTTCTCCTCGGAGGTGCAGATCGCCGAGGCCCGGTGCTTCTACGGC 326350 Query 42522 TTCCAGATAGCCATAGAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTAC 42581 |||||||| ||||| |||||| | ||| ||| ||||| | ||| | |||| || Sbjct 326351 TTCCAGATCGCCATCGAGAACATCCACAGCGAGATGTACTCGCTGCTGATTGACACCTAT 326410 Query 42582 ATCCTGGATCCCGTCGAGCGTAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATC 42641 | | |||| | |||||| || || ||| ||||| ||||| || |||||| || Sbjct 326411 GTGCGGGATGTGGCCGAGCGCGACCACCTCTTCGGCGCCATCGAGACCATCCCCTGCGTC 326470 Query 42642 AAGAAGAAGGCGGACTGGGCGCTCAACTGGATCGAGAGTCCCGACG-CAACGTTCGGCGA 42700 ||||||||||| |||||||| | |||||||||| | | | || | || |||| | Sbjct 326471 AAGAAGAAGGCCGACTGGGCCATGCGCTGGATCGAG-GACGAGTCGTCCACCTTCGCCAC 326529 Query 42701 GAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCAT 42760 | | ||||| ||||| ||||||| |||||||| |||||||| ||| |||||||| |||| Sbjct 326530 GCGCCTGGTGGCCTTCGCCGCCGTGGAGGGCATTTTCTTCTCCGGCTCCTTCGCCGCCAT 326589 Query 42761 CTTCTGGCTCAAGCAG-AAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCA 42819 ||||||||| ||| || || || |||||||| || |||||| || || |||||| Sbjct 326590 CTTCTGGCTGAAGAAGCGCGGCCTC-ATGCCCGGGCTGACCTTCAGCAATGAGCTCATCT 326648 Query 42820 GCAGGGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGC 42879 | | ||||||||||| || | ||||| || ||||| || |||||| ||||| | Sbjct 326649 CCCGTGACGAGGGGCTCCACTGCGACTTCGCGTGCCTGCTCTTCTCG---CACCTGAACT 326705 Query 42880 ACAAGCCCTCGAAGGAGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGG 42939 | |||| || || ||| |||||| ||||| |||| |||||||||| Sbjct 326706 CCCGGCCCAGCGTGGCCACCATCACCGCCCTCATCAGCGAGGCGGTGGTCATCGAGAAGG 326765 Query 42940 AGTTCCTCACGCAGTCGCTGCCCGTGTCCCTGGTCGGCATGAACCACGACCTCATGTGCA 42999 |||||||||| || | |||||||| |||| ||||||||||| ||||||||||||| Sbjct 326766 AGTTCCTCACCGAGGCCCTGCCCGTTCGCCTGATCGGCATGAACGGCGACCTCATGTGCC 326825 Query 43000 AGTACATCCAGTACGTCGCCGACCATCTCCTGTGCCAGATGGGTCTCAGCCGCC------ 43053 |||||||| ||| || |||||| | |||| | | ||| ||| || ||| Sbjct 326826 AGTACATCGAGTTTGTGGCCGAC---CGCCTG---CTGGTGGAGCTCGGCTGCCCGAAGG 326879 Query 43054 TCTACAACACGCCGTGCCCCTTCGACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCA 43113 |||||||| || | |||||||||||| ||||| | ||| | |||||||||||| Sbjct 326880 TCTACAACGCGGAGAACCCCTTCGACTTCATGGACATGATCAGTCTCCAGGGCAAGACCA 326939 Query 43114 ACTTTTTCGAGAAGCGCGTCGCCGACTACCAG 43145 |||| |||||||||||||||| ||||||||| Sbjct 326940 ACTTCTTCGAGAAGCGCGTCGGTGACTACCAG 326971 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944336673892640