Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fonticula_20alba_20[genbank_20GCA_5F000388065.2_202014-04-24] 214 sequences; 31,296,464 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq7 179 4e-40 seq5 95.1 1e-14 seq1 82.4 7e-11 >seq7 Length=2157034 Score = 179 bits (198), Expect = 4e-40 Identities = 358/525 (68%), Gaps = 13/525 (2%) Strand=Plus/Plus Query 47059 TCGAGAGCATGCCCTGCGTGCGCAGAAAGGCCGAGTGGGCCATGAAGTACATTGAAAACG 47118 |||||| ||| |||||||| | |||||||| ||||||||| | || || ||| Sbjct 326451 TCGAGACCATCCCCTGCGTCAAGAAGAAGGCCGACTGGGCCATGCGCTGGATCGAGGACG 326510 Query 47119 AAAACGTC-ACTCTGGCCGAACGTTTGATCGCTTTCGCCATCGTCGAGGGCGTCTTCTTC 47177 | |||| || | ||| || || | || |||||| ||| |||||| | |||||| Sbjct 326511 AGT-CGTCCACCTTCGCCACGCGCCTGGTGGCCTTCGCCGCCGTGGAGGGCATTTTCTTC 326569 Query 47178 TCGGGCAGCTTTGCGGCGATATTTTACATGAAAACCAAAGGAGTTATGCCCGGCCTCACG 47237 || ||| ||| || || || || | |||| | || | |||||||| || || Sbjct 326570 TCCGGCTCCTTCGCCGCCATCTTCTGGCTGAAGAAGCGCGGCCTCATGCCCGGGCTGACC 326629 Query 47238 TTTAGCAACGAGCTAATCTCGAGAGACGAAGGCCTGCACACCAACTT----TGCCTGTCT 47293 || ||||| ||||| ||||| | ||||| || || ||| | |||| |||||| || Sbjct 326630 TTCAGCAATGAGCTCATCTCCCGTGACGAGGGGCTCCACTGCGACTTCGCGTGCCTG-CT 326688 Query 47294 CTACTACAACACTAGAGTCGATCAAAAGTTGGACGTGCCCACCGTCAGCGACATGTTTGC 47353 || || || || | || || |||| ||||| ||| || | | | Sbjct 326689 CTTCTCGCAC-CTGAACTCCCGGCCCAG-----CGTGGCCACCATCACCGCCCTCATCAG 326742 Query 47354 CGAAGCCGTCGCCATTGAGATGGAGTTTTTCGCCGAGGCTCTGCCCGAATCTTTAGTGGG 47413 ||| || || | ||| |||| |||||| || ||||||| ||||||| | | || Sbjct 326743 CGAGGCGGTGGTCATCGAGAAGGAGTTCCTCACCGAGGCCCTGCCCGTTCGCCTGATCGG 326802 Query 47414 AATGAACGCGGAGATGATGAGAAAGTACATCGAATTTGTCGCCGACCGCCTGCTCGTTCA 47473 ||||||| || | ||| | |||||||||| ||||| |||||||||||||| || | Sbjct 326803 CATGAACGGCGACCTCATGTGCCAGTACATCGAGTTTGTGGCCGACCGCCTGCTGGTGGA 326862 Query 47474 GCTAAAGTATCCCAAGATTTACCACACCGAGAATCCATTCGAGTTTATGAACAACATTTC 47533 ||| | || ||| | ||| || | ||||| || ||||| || ||| ||| || Sbjct 326863 GCTCGGCTGCCCGAAGGTCTACAACGCGGAGAACCCCTTCGACTTCATGGACATGATCAG 326922 Query 47534 GCTCGAGGGCAAGACCAACTTTTTCGAGAAGCGCGTCGGCGAATA 47578 ||| |||||||||||||||| ||||||||||||||||| || || Sbjct 326923 TCTCCAGGGCAAGACCAACTTCTTCGAGAAGCGCGTCGGTGACTA 326967 >seq5 Length=2316015 Score = 95.1 bits (104), Expect = 1e-14 Identities = 319/492 (65%), Gaps = 6/492 (1%) Strand=Plus/Plus Query 145719 GTCGACGGTGAACTGCGTCGCTTGAGCGGCCGGTTTTGTGCGCAGATAGTACATGCCGGT 145778 ||| || ||||||| | || | || || || || |||||||| || ||||||||||| Sbjct 1114959 GTCAACCGTGAACTTGATGGCCTCGGCCGCGGGCTTGGTGCGCAGGTAATACATGCCGGT 1115018 Query 145779 CTTGAGCTGTTTCTGCCACGTGTAAAAGTGTATGCTCGACATGACCGAGTAC--GTGGGT 145836 |||||| |||| ||| || ||||| ||| | || |||| | ||||| Sbjct 1115019 CTTGAGGCCCTTCTTCCAGCCATAGAAGTGCATGGAAGTCA--ACCGGCTGGCGGTGGGC 1115076 Query 145837 TCGGCGACAAACAAATTTAGAGATTGGCTCTGATCAATGAAAGGAGCCCGGTCGGCGGCC 145896 ||| ||| || | || || ||||||||||| ||||| | | |||||||||||||| Sbjct 1115077 TCGCCGATGAAGATGTTCAGGCTCTGGCTCTGATCGATGAAGGCACCCCGGTCGGCGGCC 1115136 Query 145897 ATGTCTATCATGCACTTTGATTTAATTTCCCATGCGGTTTTAAAGAGATCCTTGACGTGC 145956 ||||| || ||| || | || ||||| | ||| || |||| |||| | || Sbjct 1115137 ATGTCGATGATGGACCGCTGGCTGATCTCCCAGGTGGTCTTGTAGAGGGCCTTCAGGTCA 1115196 Query 145957 TGGGGTATTTCGTCAATGTTCTGCACAGACCCATTTTCGGCCAATATTTTGTTGCGCA-A 146015 | ||| || | ||| || || ||| |||| | || | | || | | Sbjct 1115197 TCGGGGATGGAAGGCACCCGCTGGACGGAGCCACCGGCGGCGATGATCATCTGCCGGACA 1115256 Query 146016 TTCTGGAGTGTAAATGTTCAAGTCTACGAGGGCCTTGATGAGATACTGGTTGACCACCTG 146075 || | | | | | | | | |||| ||||||| || | ||||||||| ||| Sbjct 1115257 TTGT-CATTCCACACCCCAATGCGAATGAGGTCCTTGATCAGGTGGGGGTTGACCATCTG 1115315 Query 146076 AAACTCGCCGGCGAGAACGCGCCTCAGATACACGTTGCTGGTGAACGGCTCGAACGACTC 146135 ||||| |||| || || || | | ||| | |||| |||| | ||||||| |||| Sbjct 1115316 GAACTCCCCGGACAGCACACGACGGACATAGATGTTGGAGGTGTAGGGCTCGATGCACTC 1115375 Query 146136 GTTGTTACCGAGTATCTGCGCCGTCGTAGCGGTAGGCATGTACGCCACCAGCAAAGAGTT 146195 ||| ||||| ||||||| || | || || ||||| |||||||| | ||||| Sbjct 1115376 ATTGAAGCCGAGGATCTGCGAGGTGGAGGCCGTCGGCATCGGGGCCACCAGGAGCGAGTT 1115435 Query 146196 TCTCACGCCGTG 146207 | || ||| || Sbjct 1115436 ACGCAGGCCATG 1115447 >seq1 Length=4772237 Score = 82.4 bits (90), Expect = 7e-11 Identities = 111/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 126959 TCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTG 127018 || || ||||| || || ||| | |||| ||||||||||| || || || ||||||||| Sbjct 1125403 TCCTCGAGCTGCTTGCCGGCGAAAATCAGGCGCTGCTGATCAGGGGGGATACCCTCCTTG 1125344 Query 127019 TCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACC 127078 ||| || || ||||| |||| || ||| | |||||| |||| ||| | Sbjct 1125343 TCCTGAATCTTAGCCTTGACGGCATCGATGGAGTCAGAGGGCTCGACCTCGAGGGTGATG 1125284 Query 127079 GTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || |||||||| || || || || || |||||||| Sbjct 1125283 GTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 1125249 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475499528035360