Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fonticula_20alba_20[genbank_20GCA_5F000388065.2_202014-04-24] 214 sequences; 31,296,464 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq7 242 6e-59 seq5 143 4e-29 >seq7 Length=2157034 Score = 242 bits (268), Expect = 6e-59 Identities = 558/831 (67%), Gaps = 21/831 (3%) Strand=Plus/Minus Query 159649 CTTCTCGAAAAAGTTGGTCTTGCCCTCCATGGATATTGAT----TCCATGAACCCGAATG 159704 ||||||||| |||||||||||||||| ||| | |||| |||||||| |||| | Sbjct 326953 CTTCTCGAAGAAGTTGGTCTTGCCCT----GGAGACTGATCATGTCCATGAAGTCGAAGG 326898 Query 159705 GGTTCTTCACGTGATAGCGCTTCGGAAATCCGAGAGCCGCCAGCAACCTGTCTGCCACAA 159764 |||||| | ||| ||| |||||| | ||||| || |||||| | ||| ||||||| Sbjct 326897 GGTTCTCCGCGTTGTAGACCTTCGGGCAGCCGAGCTCCACCAGCAGGCGGTCGGCCACAA 326838 Query 159765 ATTCGATGTAGCTACACATCTGCTCACAGTTGATCCCCAGCAGCCTAACGGGGAGCGCTT 159824 | |||||||| ||||| | || | ||| || || | ||| | |||||| || || | Sbjct 326837 ACTCGATGTACTGGCACATGAGGTCGCCGTTCATGCCGATCAGGCGAACGGGCAGGGCCT 326778 Query 159825 CCGACAGAAACTCCTTCTCAATCTCGACCGCTTCGGTCACAATCTGCGAGACACGTTCGT 159884 | | || ||||||||||| || | ||||| ||| | | || | | | | || Sbjct 326777 CGGTGAGGAACTCCTTCTCGATGACCACCGCCTCGCTGA-----TGAGGGCGGTGATGGT 326723 Query 159885 ACCCCGGCTTGCCCAAAATGT--GGTCCTTAAACAGGAGGCACGCAAAGTCGCAGTGCAG 159942 || ||| | || | | ||| | || || |||||||| ||||||||||| || Sbjct 326722 GGCCACGCTGGGCCGGGAGTTCAGGTGCGAGAAGAGCAGGCACGCGAAGTCGCAGTGGAG 326663 Query 159943 TCCCTCGTCCCGAGAGATGAACTCGTTGGACATGATGAGGCCCGGCATGATCCCACGCGG 160002 |||||||| || ||||||| ||| ||| | | | || || ||||||| || ||| Sbjct 326662 CCCCTCGTCACGGGAGATGAGCTCATTGCTGAAGGTCAGCCCGGGCATGAGGCCGCGCTT 326603 Query 160003 TTTGAGCCAAAAAATGGCCGCAAAAGCACCGCTAAAAAAGATCCCCTCCACGGCCGCAAA 160062 || ||||| || ||||| || || | ||| || || || ||||||||||| || || Sbjct 326602 CTTCAGCCAGAAGATGGCGGCGAAGGAGCCGGAGAAGAAAATGCCCTCCACGGCGGCGAA 326543 Query 160063 CGCCACGAGCCTCTCACCAAAAGAGGCGTTGGTGTCATGGGTCCACCTTTTGGCCCATTC 160122 ||||| || | | | || | || ||| | | |||| | ||||||| || Sbjct 326542 GGCCACCAGGCGCGTGGCGAAGGTGGACGACTCGTCCTCGATCCAGCGCATGGCCCAGTC 326483 Query 160123 AGCCTTCTTTGCGATGCACGGCATGCGCTCGACGGCGTTAAACAATCTGTCCTGCTCCTT 160182 |||||||| || ||| || ||| ||||| |||| || | ||| |||| Sbjct 326482 GGCCTTCTTCTTGACGCAGGGGATGGTCTCGATGGCGCCGAAGAGGTGGTCGCGCTCGGC 326423 Query 160183 CACATCCTTGATCAGA-GTAGCAATCAGCTTCGAGTACATTTCTGCGTGCACATTTTCGA 160241 ||||||| | || | || |||||||| ||||||||| || ||| | || |||| Sbjct 326422 CACATCC-CGCACATAGGTGTCAATCAGCAGCGAGTACATCTCGCTGTGGATGTTCTCGA 326364 Query 160242 TGGCCATCTGAAAGTTGTAGAAATATGTCGCCTC-CAGATACTGCACCTCCTGTGTGAAC 160300 |||| ||||| ||| |||||| | ||||| ||| |||||||||| | |||| Sbjct 326363 TGGCGATCTGGAAGCCGTAGAAGCACCGGGCCTCGGCGAT-CTGCACCTCCGAGGAGAAC 326305 Query 160301 C-TTTGACCCAGATTGGCATTAACCAACCCGTCGGCGGCCGCAAAGAAAGCCAACACGTG 160359 | |||| ||||||| |||| || | || || | || || ||||| |||| ||| || Sbjct 326304 CGGTTGA-CCAGATTCTCATTGACAATGCCATCCGACGCGGCGAAGAACGCCAGCACATG 326246 Query 160360 AGAGATGAAATGTCTCTCGTCTTTGTTGAGTCTCTTTTCCCAGTGTGTCACGTCTTGGGC 160419 |||||||| | | ||||| | | || | || | ||||| || ||| ||| Sbjct 326245 GGAGATGAAGTACCGCTCGTTGGCGGTCAGCTTGTTGTTCCAGTCGTCCAGGTCGCGGGA 326186 Query 160420 CAAATCAACCTCTTCCGCGCTCCAATTGGCAGCCTGAGCAGTTTTGTACAT 160470 | || ||||| || ||| |||| || |||| || | |||||||| Sbjct 326185 GAGGTCCACCTCCTCGGCGGTCCAGAAGGAGGCCTCGGCCTTCTTGTACAT 326135 >seq5 Length=2316015 Score = 143 bits (158), Expect = 4e-29 Identities = 332/497 (67%), Gaps = 24/497 (5%) Strand=Plus/Plus Query 203839 CTTGTCCACCGTGAACTGAATGGCGTTCACGGCAGGCCTGCTTCTCAGATAGTACATGCC 203898 || ||| |||||||||| ||||| | | || ||| || | | ||| || |||||||| Sbjct 1114956 CTGGTCAACCGTGAACTTGATGGCCTCGGCCGCGGGCTTGGTGCGCAGGTAATACATGCC 1115015 Query 203899 GGTCTTTAGGCCCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCACGTTGGG 203958 |||||| |||||||||| ||| || || | ||||||||||| || ||| || |||| Sbjct 1115016 GGTCTTGAGGCCCTTCTTCCAGCCATAGAAGTGCATGGAAGTCAACCGGCTGGCGGTGGG 1115075 Query 203959 GTCGGCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCCCGATCTGCGGC 204018 ||| | ||| |||||||| |||||| || |||||||| | |||| || ||||| Sbjct 1115076 CTCGCCGATGAAGATGTTCAGGCTCTGGCTCTGATCGATGAAGGCACCCCGGTCGGCGGC 1115135 Query 204019 CATATTGATAATGGTCTTCTGCGAAATCTCCCACACCGTCTTGAACACGTC--TCTGGT- 204075 ||| | ||| |||| | ||| |||||||| |||||| | | | | || ||| Sbjct 1115136 CATGTCGATGATGGACCGCTGGCTGATCTCCCAGGTGGTCTTGTAGAGGGCCTTCAGGTC 1115195 Query 204076 ----GTGTTG--AGGCACATCTTCCCACGTCCTGATCGAGCCGTTGTCGGCCATCAGTCT 204129 | | || |||||| | | || ||||| | |||| || | | Sbjct 1115196 ATCGGGGATGGAAGGCAC---------CCGCTGGACGGAGCCACCGGCGGCGATGA---T 1115243 Query 204130 CATC--CTCGTC-TCCTCCCCCCACATGCCCAACCTGATCAGCTCCCGCACCAGGTGGGG 204186 |||| | | | | || ||||| || | | || || ||| | ||||||||| Sbjct 1115244 CATCTGCCGGACATTGTCATTCCACACCCCAATGCGAATGAGGTCCTTGATCAGGTGGGG 1115303 Query 204187 GTTGATGATCTGAAAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGAATGG 204246 ||||| ||||| || || ||||||||||| | ||| | | |||| |||| | || Sbjct 1115304 GTTGACCATCTGGAACTCCCCGGACAGCACACGACGGACATAGATGTTGGAGGTGTAGGG 1115363 Query 204247 TTCGAACGCCTCGTTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAGCCAG 204306 |||| ||| ||| ||||| ||||| | |||| |||||| ||||| || |||| Sbjct 1115364 CTCGATGCACTCATTGAAGCCGAGGATCTGCGAGGTGGAGGCCGTCGGCATCGGGGCCAC 1115423 Query 204307 GAGCAGGGAGTTGCGCA 204323 || || ||||| |||| Sbjct 1115424 CAGGAGCGAGTTACGCA 1115440 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795153072959840