Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fonticula_20alba_20[genbank_20GCA_5F000388065.2_202014-04-24] 214 sequences; 31,296,464 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq7 426 2e-114 seq1 120 3e-22 seq3 100 3e-16 >seq7 Length=2157034 Score = 426 bits (472), Expect = 2e-114 Identities = 673/956 (70%), Gaps = 21/956 (2%) Strand=Plus/Minus Query 132550 TAAAAGTCCGCATCCAAAGTAAA---GGTGTCGTCCTTGGCAAA---CATCACGCCAAAT 132603 || |||||||| |||| || || |||||| ||||||| ||| ||||| Sbjct 327033 TAGAAGTCCGCGTCCAGGGTGAACTCGGTGTCCTCCTTGGAGCTGTGCATGACGCCGGCC 326974 Query 132604 TTTTGATATTCGCCCACCTTTTTCTCaaaaaaaTTAGTTTTTCCCTCCAAGGAAA-TGAG 132662 || || || || || || ||||| || || || || || |||| ||| | ||| Sbjct 326973 TTCTGGTAGTCACCGACGCGCTTCTCGAAGAAGTTGGTCTTGCCCT----GGAGACTGAT 326918 Query 132663 CGT---CATAAAATCCAAGGGGTTGGCTGTGTTGTAGTGCTTGGTGCCGATCAGGTCGAC 132719 | | ||| || || |||||||| | | ||||||| ||| | || | || || || Sbjct 326917 CATGTCCATGAAGTCGAAGGGGTTCTCCGCGTTGTAGACCTTCGGGCAGCCGAGCTCCAC 326858 Query 132720 GAGCAGCCTGTCGGCCACGAACTCGATGTATTGCGACATGGTTTCGCAATTAAGTCCCAG 132779 ||||| | ||||||||| ||||||||||| || ||||| |||| || | || | Sbjct 326857 CAGCAGGCGGTCGGCCACAAACTCGATGTACTGGCACATGAGGTCGCCGTTCATGCCGAT 326798 Query 132780 CAGACGCACCGGCAGCGCTTCGGTGAGAAAGCGTTGCTCGATGGCGACCGCGTCGGTGAC 132839 ||| || || ||||| || |||||||| || | ||||||| | ||||| ||| ||| Sbjct 326797 CAGGCGAACGGGCAGGGCCTCGGTGAGGAACTCCTTCTCGATGACCACCGCCTCGCTGAT 326738 Query 132840 GATTTCCCTAACGCGCGCCGCGCTCGGCCGTTGCACCAAATGCTTGAACATCAAGCAAGC 132899 || | | | | ||| |||| ||||| || ||| ||| | || ||| || Sbjct 326737 GAGGGCGGTGATGGTGGCCACGCTGGGCCGGGAGTTCAGGTGCGAGAAGAGCAGGCACGC 326678 Query 132900 AAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGGG 132959 |||||||| || | |||||||| | ||| ||||| || |||||||| |||| ||||| Sbjct 326677 GAAGTCGCAGTGGAGCCCCTCGTCACGGGAGATGAGCTCATTGCTGAAGGTCAGCCCGGG 326618 Query 132960 CATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGACGCC 133019 |||||||||||| || || ||||| || ||||||||||| ||| || ||||| | ||| Sbjct 326617 CATGAGGCCGCGCTTCTTCAGCCAGAAGATGGCGGCGAAGGAGCCGGAGAAGAAAATGCC 326558 Query 133020 CTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGG-CTTCT-TTGCTGGCGATC 133077 ||| ||||| ||||| |||||||||||| | |||| |||| | || | || ||||| Sbjct 326557 CTCCACGGCGGCGAAGGCCACCAGGCGCGTGGCGAAGGTGGACGACTCGTCCT--CGATC 326500 Query 133078 CAGCGCAGCGCCCATTCGGCCTTTTCTTTGACGCACGGCATCGTTTCGATGGCGTTCAAC 133137 ||||||| ||||| |||||||| | |||||||| || || || ||||||||| || Sbjct 326499 CAGCGCATGGCCCAGTCGGCCTTCTTCTTGACGCAGGGGATGGTCTCGATGGCGCCGAAG 326440 Query 133138 AAACGGAGTTTCTCTTCCGAGGAACGCACGTAGGTGTCGATGAGGGTCGAATACATTTCC 133197 | || ||| || ||||| |||||||| || || ||| ||||| || Sbjct 326439 AGGTGGTCGCGCTCGGCCACATCCCGCACATAGGTGTCAATCAGCAGCGAGTACATCTCG 326380 Query 133198 GAGTGTACGTTCTCCATGGCGATTTGAAAGCCGTAAAAGCACCGCGCCTCGACCACCTGC 133257 ||| | |||||| |||||||| || |||||||| |||||||| |||||| | | |||| Sbjct 326379 CTGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAGAAGCACCGGGCCTCGGCGATCTGC 326320 Query 133258 ACTTCTTGAGCGAAACGCTCGACCAGATTTTCGTTGACGATGCCGTCGCTGGCGGCGAAA 133317 || || | ||| || | ||||||||| || ||||| ||||| || |||||||| Sbjct 326319 ACCTCCGAGGAGAACCGGTTGACCAGATTCTCATTGACAATGCCATCCGACGCGGCGAAG 326260 Query 133318 AAGGCCAGCACGTGCTTGATGAAATGGCGCTCGTTGTCGTTCA---AGCGCTCCCAGTCG 133374 || |||||||| || |||||| | ||||||||| || ||| | | ||||||| Sbjct 326259 AACGCCAGCACATGGGAGATGAAGTACCGCTCGTTGGCGGTCAGCTTGTTGTTCCAGTCG 326200 Query 133375 CGCGTGTCCTTGGACAGGTCCACCTCCTCGACGGTCCAAAACGACGCCTCGGCTTTTTTG 133434 | ||| ||| ||||||||||||||| ||||||| || || |||||||| || ||| Sbjct 326199 TCCAGGTCGCGGGAGAGGTCCACCTCCTCGGCGGTCCAGAAGGAGGCCTCGGCCTTCTTG 326140 Query 133435 TACATACTCCACATGTCCGAATATTGTATGGGAAAAATCACAAACCGGCGGGGGTT 133490 ||||| ||| || || || | ||||| || | || || || |||||||| Sbjct 326139 TACATCTGCCAAATCTCATGGTACTCGATGGGGAAGAGGACGAAGCGCCGGGGGTT 326084 >seq1 Length=4772237 Score = 120 bits (132), Expect = 3e-22 Identities = 141/191 (74%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || ||||| ||||| ||||||||| |||| |||||| || | Sbjct 1125249 ATGCAGATCTTCGTCAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTCGAGCCCTCT 1125308 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 ||| | | | | | || | || || | ||||| ||||| || ||| | || || Sbjct 1125309 GACTCCATCGATGCCGTCAAGGCTAAGATTCAGGACAAGGAGGGTATCCCCCCTGATCAG 1125368 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||||| || |||| ||| ||||| ||||| || |||| || |||||| ||||||||| Sbjct 1125369 CAGCGCCTGATTTTCGCCGGCAAGCAGCTCGAGGACGGCCGTACCCTCTCGGACTACAAC 1125428 Query 38424 ATCCAAAAGGA 38434 ||||| ||||| Sbjct 1125429 ATCCAGAAGGA 1125439 >seq3 Length=3619281 Score = 100 bits (110), Expect = 3e-16 Identities = 139/191 (73%), Gaps = 4/191 (2%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || || || || || ||||||||| | || || ||| || | Sbjct 1037527 ATGCAGATTTTCGTTAAGACCCTTACCGGTAAGACCATCACCCTTGAGGTTGAGCCCTCT 1037468 Query 38304 GACAGCGTGCAAACGC--TTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACC 38361 ||| || | | ||| | || | || || | ||||| ||||| || ||| | || | Sbjct 1037467 GACT-CGATCGA-CGCCGTCAAGGCTAAGATTCAGGACAAGGAGGGTATCCCCCCTGATC 1037410 Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421 | ||||| || |||| ||| ||||| ||||| || || | ||||||||| |||||||| Sbjct 1037409 AGCAGCGCCTGATTTTCGCCGGCAAGCAGCTCGAGGATGGCCGCACCCTCTCCGACTACA 1037350 Query 38422 ACATCCAAAAG 38432 ||||||| ||| Sbjct 1037349 ACATCCAGAAG 1037339 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500171462037760