Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fonticula_20alba_20[genbank_20GCA_5F000388065.2_202014-04-24] 214 sequences; 31,296,464 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq5 360 2e-94 seq1 107 2e-18 seq23 93.3 5e-14 >seq5 Length=2316015 Score = 360 bits (398), Expect = 2e-94 Identities = 761/1134 (67%), Gaps = 6/1134 (1%) Strand=Plus/Minus Query 7011 CACCCGTTAAGATGGCGGCTTGGACCGTCGCCCCGTATGCGACCGCCTCATCGGGGTTAA 7070 |||| || | |||||||| ||||| | || || || ||||| |||||||||||||| | Sbjct 1717509 CACCGGTCAGAATGGCGGCCTGGACGGCGGCACCATAGGCGACGGCCTCATCGGGGTTGA 1717450 Query 7071 TCGTTTTATTCAGTTCTTTACCGTTAAAATAATCCGATAACATTTGTTGAATTTTCGGGA 7130 | | || | || || ||| || | || || | | | || | || | Sbjct 1717449 TGGACTTGCAGGGCTCCTTGCCGCCGAAGAAGTCGGACACGAGCTTCTGGACACGGGGAA 1717390 Query 7131 TTCGTGTCGATCCACCGACCAAAACGATTTCATTCACTTTCGATTTATCGATCTTTGAGT 7190 | || || || |||||||||| ||||| |||| || || || || || ||||| |||| Sbjct 1717389 TACGAGTGGAACCACCGACCAGGACGATCTCATCGACCTTGGACTTGTCCATCTTGGAGT 1717330 Query 7191 CTCGAAGTGTTTTTTCGACAGGTTCCATACATTTACGGAACAAGTCCATACACAGTTCCT 7250 | || || || || || |||||| | |||| || || |||| Sbjct 1717329 CGGACAGGACGCGCTCAACCGGGGACAGGGTGCCACGGAAGAGGTCCGAGCAGAGCTCCT 1717270 Query 7251 CAAAACGTGCACGGGTAATGGATGTATAGAAATCAACGCCGTCGTATAACGAATCAATTT 7310 | || || |||||||| ||| || ||||| || || || ||| | | || ||||| | Sbjct 1717269 CGAAGCGGGCACGGGTGATGTTGGTGTAGAAGTCGACACCCTCGAAGAGAGAGTCAATCT 1717210 Query 7311 CAATGGTTGTTTGTGCCGTCGAAGATAACGTTCGCTTTGCGCGCTCACACGCCGTTCGTA 7370 | |||| | || || | | ||| | | ||||| || ||||| || || || || | Sbjct 1717209 CGATGGAGGCCTGGGCAGAGGCAGAGAGGGCGCGCTTGGCACGCTCGCAGGCGGTGCGCA 1717150 Query 7371 AACGACGAAGGGCACGCGGGTTACCGGAAATATCTTTCTTATGTTTACGTTTAAACTCTT 7430 ||| || |||||||| | ||| ||||| | || ||||| || || || ||||| | Sbjct 1717149 GACGGCGCAGGGCACGGGCGTTGCCGGACAGGTCCTTCTTGTGCTTGCGGCGGAACTCAT 1717090 Query 7431 CAGAGAAGTGTCGAAGGAGTCTCGAATCGAAATCTTCACCACCCAAGTGTGTATCCCCCG 7490 | |||||| || || | ||||| || |||||||| | ||| || || || | Sbjct 1717089 CCAGGAAGTGGGCAACCAGGCGGTTGTCGAAGTCCTCACCACCGAGGTGAGTGTCACCAG 1717030 Query 7491 CGGTCGCTTTGACTTCAAAGATACCTCCTTCAATGTTTAACAACGAAACATCAAACGTAC 7550 |||| || ||||| || |||||||| | || ||| | | | || ||||| || |||| Sbjct 1717029 CGGTGGCCTTGACCTCGAAGATACCGTCGTCGATGGTCAGGAGGGACACATCGAAGGTAC 1716970 Query 7551 CACCACCCAGGTCAAAAATGAGTACGTTCGTATCGTCGTCTTTGTTCTTATCGAGACCGT 7610 ||||||| || || || || || |||||| | ||| | || ||||| |||||||||| Sbjct 1716969 CACCACCGAGATCGAAGATCAGGACGTTCATCTCGCCCTCGCCCTTCTTGTCGAGACCGT 1716910 Query 7611 ACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAGACAGTTCAGGCCAGCAATAG 7670 | || || || || || || || || || || ||||| || |||||||||||| || | Sbjct 1716909 AGGCAATGGCGGCGGCGGTGGGCTCGTTGATGATACGCAGGACGTTCAGGCCAGCGATGG 1716850 Query 7671 TTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGA 7730 | ||||| || || || || || || | ||||| |||||||| ||||| || |||| Sbjct 1716849 CACCGGCATCCTTGGTGGCCTGGCGCTGGGCGTCGTTGAAGTAGGCGGGGACGGTGACGA 1716790 Query 7731 CCGCGTCCGTGACTTTCTTACCGAGATACGATTCCGCGATATCTTTCATTTTGGTAAGAA 7790 | ||||| ||||| |||||| || || || ||| | || ||||| ||| |||| Sbjct 1716789 CGGCGTCGGTGACGGCGCGACCGAGGTAGGACTCGGCGGTCTCCTTCATCTTGACCAGAA 1716730 Query 7791 CCATCGATGAAATCTCTTCAGCCGCAAACTGTTTCGTTTCACCGTTAAAATCAACTTCAA 7850 ||| || || ||||| || | | || | |||||| || || || | | Sbjct 1716729 TCATGGAGGAGATCTCCTCCGGGGTGAAGGTGGTGACCTCACCGCGGAACTCGACCTGGA 1716670 Query 7851 TCATGGGTTTATCCGCAGCACCGGGGATAACCTTATACGACCAATCTTTCATATCGTCTT 7910 | ||||| || | | | ||| ||||| | | ||| | ||||| ||| | Sbjct 1716669 TGATGGGCTT---GGTGTCCTTGTCGATGACCTTGAAGGGCCAGTGCTTCATGTCGGACT 1716613 Query 7911 GGACCTGTTGGTCCGAAAACTTTCTTCCGATAAGACGCTTTGCATCAAAAACTGTGTTTT 7970 |||||| | ||| || ||||| | ||||| || ||||| || || || || ||||| | Sbjct 1716612 GGACCTCCTTGTCGGAGAACTTGCGACCGATGAGGCGCTTGGCGTCGAAGACGGTGTTCT 1716553 Query 7971 TGGGGTTCATGGCTGTTTGGTTCTTCGCCGCGTCCCCGATAAGACGTTCATTATTTTCCG 8030 ||||||||||| ||||| || || || ||||| ||||| || || | Sbjct 1716552 CCGGGTTCATGGCGACCTGGTTGCGGGCGGCATCACCGATGAGACGCTC---GGAGTCGG 1716496 Query 8031 TAAACGCGACGTACGATGGGGTCGTTCGATTCCCTTGGTCGTTCGCAATAATTTCTACGC 8090 | || ||||||||||| | ||| || || || || |||||||| ||||| || || || | Sbjct 1716495 TGAAGGCGACGTACGAGGCGGTGGTGCGGTTACCCTGGTCGTTGGCAATGATCTCAACAC 1716436 Query 8091 GGTCGTTTTGCCAGACGCCGACGCACGAATACGTTGTTCCTAAATCAATACCGA 8144 | ||||| |||||||| || ||||| || || || || || | ||| ||||||| Sbjct 1716435 GATCGTTCTGCCAGACACCAACGCAGGAGTAGGTGGTGCCAAGATCGATACCGA 1716382 >seq1 Length=4772237 Score = 107 bits (118), Expect = 2e-18 Identities = 222/327 (68%), Gaps = 5/327 (2%) Strand=Plus/Plus Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516 ||||| || | |||||| | ||| || || || ||| || || || |||| || Sbjct 946652 TCGAAGTCCTGACCACCGAGGTGGGTGTCACCGCTGGTGGCCAGCACCTCGAAGACGCCG 946711 Query 7517 CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACG 7576 |||||| | || || ||||| || ||||||||||| || || || | ||| | | Sbjct 946712 GAGTCAATGGACAGCAGGGACACATCGAAGGTACCACCACCGAGATCGAACACGAGGATG 946771 Query 7577 TTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCA 7636 | |||||| | || ||| || || ||||| || || || || || || || || Sbjct 946772 GTGCGCTCGTCGCCCTT---CTTGTCCAGGCCGTAGGCAATGGCAGCGGCGGTGGGCTCG 946828 Query 7637 TTAATAATACGAAG-ACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCG 7695 || || || || || ||| || || || || || || | ||||| || || || || || Sbjct 946829 TTGATGATGCGCAGGACA-TTGAGACCGGCGATGGTGCCGGCATCCTTGGTGGCCTGGCG 946887 Query 7696 TTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAG 7755 || | ||||| ||||||||||| || || ||||| |||| | |||| | | ||| || Sbjct 946888 CTGGGCGTCGTTGAAGTAGGCCGGCACAGTGACGACGGCGTTCTTGACCTCATGACCAAG 946947 Query 7756 ATACGATTCCGCGATATCTTTCATTTT 7782 || | || ||||| || ||||| || Sbjct 946948 GTAGGTCTCGGCGATCTCCTTCATCTT 946974 >seq23 Length=66493 Score = 93.3 bits (102), Expect = 5e-14 Identities = 198/290 (68%), Gaps = 12/290 (4%) Strand=Plus/Minus Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516 ||||| || |||||||| | || || || || ||| | ||||| || |||| ||| Sbjct 63307 TCGAAGTCCTCACCACCGAGATGGGTGTCACCGTTGGTGGACTTGACCTCGAAGA--CCT 63250 Query 7517 CCT--TCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTA 7574 ||| | |||| | | |||| ||| || ||||||||||| || || |||| | Sbjct 63249 CCTCATGGATGTCGAGGATGGAAATATCGAAGGTACCACCACCGAGATCGAAAACGG--- 63193 Query 7575 CGTTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTT 7634 || | || | ||| | | ||| |||||||||| || | || || || || || | Sbjct 63192 CGATGGTCTTGTCACC---GGACTTGCCGAGACCGTAGGCCAGGGCGGCGGCGGTCGGCT 63136 Query 7635 CATTAATAATACGAAG-ACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGT 7693 | || | || ||| || ||| | ||| || || || || | || || || || || || Sbjct 63135 CGTTGACAACACGCAGGACA-TCCAGACCGGCGATGGTACCGGCGTCCTTGGTGGCCTGG 63077 Query 7694 CGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGAC 7743 || || || ||||| ||||||||||||||||| | ||| || | ||||| Sbjct 63076 CGCTGGGAGTCGTTGAAGTAGGCCGGGACCGTGATGACGGCCTGGGTGAC 63027 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635131101019760