Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fonticula_20alba_20[genbank_20GCA_5F000388065.2_202014-04-24] 214 sequences; 31,296,464 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq12 147 3e-30 seq5 138 1e-27 seq7 109 6e-19 >seq12 Length=745128 Score = 147 bits (162), Expect = 3e-30 Identities = 339/497 (68%), Gaps = 14/497 (3%) Strand=Plus/Minus Query 11507 CGAAACGACCTGGGCGGAGTAGAGCATCATCAAGAATATCGACACGGTTTGTAGCGGCAA 11566 |||| || || || ||| | || |||||||| || | || | ||||| ||| |||| | Sbjct 118164 CGAAGCGCCCAGGCCGGCGGAGGGCATCATCCAGGACGTCCGCGCGGTTGGTACCGGCCA 118105 Query 11567 TGACTACAATGCCAGTCTCATTGTCGAAACCGTCCATTTCTGTGAGAAGCTGGTTGATCG 11626 ||| | |||||| | |||||| |||||||| || ||| | |||||||| | Sbjct 118104 GGACAATGATGCCATCGGCCGGGTCGAAGCCGTCCATCTCCACGAGGATCTGGTTGAGGG 118045 Query 11627 T-CTGTTCACGCTCATCGTTGGAGGGCATACCACC--TGCCGAACGCTTCTTACCGACAG 11683 | |||| | |||| |||||||| | | | | ||| | ||| | |||| | Sbjct 118044 TGCTGT-CGTGCTCGTCGTTGGAATGGCTCCGGCGGTTGCTG--CGCGACCGGCCGATGG 117988 Query 11684 CGTCAATCTCATCGATGAATACGATACACGGTTGGTTGGCA-CGTGCCTGT-TCGAAAAG 11741 |||| |||||||||||||| | ||| || || ||| || | || | || ||||| || Sbjct 117987 CGTCGATCTCATCGATGAAAATGATGCAGGG--GGTGTGCTTCTTGGCGGTCTCGAAGAG 117930 Query 11742 TTCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAACGAAGTTTGCGGCAGA-AC 11800 || || ||||| || || ||||| || ||||||| | ||| | | | | || || Sbjct 117929 ATCGCGCACACGGGCCGGCCCGACACCGACATACATCTCGATGAACTCCGAGCCGGAGAC 117870 Query 11801 ACTGAATGAAGGGAACATTAGACTCACCAGCGATGGCTCGAGCGAGGAGAGTCTTACCCG 11860 ||||| ||||||||| || |||||| ||| |||| || || || |||||||| | Sbjct 117869 ACTGAG-GAAGGGAACGCCAGCCTCACCGGCGGTGGCCTTGGCCAGCAGGGTCTTACCGG 117811 Query 11861 TACCAGGTGCACCAGCGAGAAGGGCGCCACGGGGGATCTTGGCACC-ACTTCCAAAGTAG 11919 |||| || | || | || ||||| || |||||||||||||| || | ||| |||| Sbjct 117810 TACCCGGGGGCCCGGTCAGCAGGGCACCGCGGGGGATCTTGGCCCCGAGCTCC-CGGTAG 117752 Query 11920 CGCTCAGGCTTCTTGAGGAAGTCCACAATCTCCTCAAGTTCCTCCTTGGCGGAGTCGATA 11979 | || |||||||||||| ||| | ||| | |||| |||||| |||| | Sbjct 117751 ATGGCCGGGTTCTTGAGGAAGGACACGAATTCCATGATCTCCTGCTTGGCCTCATCGACA 117692 Query 11980 CCCTCAACATCGGTGAA 11996 || | ||||||| ||| Sbjct 117691 CCGGCCACATCGGCGAA 117675 >seq5 Length=2316015 Score = 138 bits (152), Expect = 1e-27 Identities = 556/866 (64%), Gaps = 21/866 (2%) Strand=Plus/Plus Query 110281 GGGAGAGCAATAGACGCAAGATTGCACACAGAAGTCTCGTCTTTGTCGGTGTATTCCAAA 110340 || || ||||| || || || |||||||| | |||||| ||| |||||| | | Sbjct 1115878 GGCAGGGCAATGGAGGCCAGGTTGCACACGGCCACCTCGTCGTTGCTGGTGTACTGGACG 1115937 Query 110341 ATTTCCGTACACAAGTTGGAACTCTTAATGACACCCAAGTTCTTCTGATTCGATTTGGAG 110400 || || || || | ||| || | ||| ||| ||| | ||||||||| || || || | Sbjct 1115938 ATCTCGGTGCAGAGGTTCGAGCACTTGATGGTACCGAGGTTCTTCTGGTTGGACTTCTGG 1115997 Query 110401 TTGCATGCATCCTTATAGAGCATGTATGGGGTACCAGTTTCCGTCTGTGACTTGAGAATG 110460 ||||| |||||||| || | ||| | ||||| || || ||| ||| | || | || Sbjct 1115998 TTGCAGGCATCCTTGTACATGATGAAGGGGGTGCCGGTCTCCACCTGGGCCTCCATGAT- 1116056 Query 110461 GCCTTCCATACATCGGCGGCGGGGACAG----TTGCGTTAGCGAGACCTTCCTCCTCGTA 110516 | | | ||| | || | | || ||||| || | || || |||||| Sbjct 1116057 -CTTGCGCCACAGCAGCTGGGCCTTCATGACCTTGCGG--GCACGCCCCTCGGACTCGTA 1116113 Query 110517 CTTGGTGTACAAGTCCTCAAATTCCTGTCCGTA-CACATCAGAAAGACCCTTCGCCTTGT 110575 ||| | | ||| || |||| || || ||| || || ||| |||| | Sbjct 1116114 ACGCTGGTAGAGGGTCTCGAACTCCTCGCCATAGCAC-TCGTGCAGGCCCGGGGCCTCGC 1116172 Query 110576 CGGGACAGAAGAGGGACCAATTTCCACCCTCCTCAACCCTCTTCATGAACAGGTCAGGAA 110635 || ||||| || ||||| | || || ||| || | ||||||||| || || || | Sbjct 1116173 GCGGGCAGAACAGCGACCAGTCGCCGCCGGACTCCACGCGCTTCATGAAAAGATCCGGCA 1116232 Query 110636 TCCACATCGCCGAGAAAAGGTCACGGCAACGAGCCTCTTCATCACCTTGGTTGAGGCGTA 110695 ||||| || |||| ||||||||| ||||| ||| || | || ||| ||| | Sbjct 1116233 CCCACAGGGCAAAGAAGAGGTCACGGGCACGAGTCTCCTCGGCGCCGGTGTTCTTGCGCA 1116292 Query 110696 GCTCCAAAAAGTCCATGATATCCGAGTGCCATGGTTCGAGATAGA---CA---GCGATGG 110749 |||| | ||| | | ||||| |||||| || || || |||| || ||| || Sbjct 1116293 GCTCGATGAAGGACTCCACATCCGCGTGCCAGGGCTCCAGGTAGATGGCAAACGCGCCGG 1116352 Query 110750 ATCCCTTACGACGACCCGCCTGGTTAACATAGCGTGCTGTGGCATTGAAGACCCTGAGCA 110809 | ||| | |||| |||| || || || || ||||||||||| || | |||| Sbjct 1116353 GGCGCTTGTTGCCACCC---TGGTCGACGTAACGCGCGGTGGCATTGAACACACGCAGCA 1116409 Query 110810 TAGGAATAATTCCATCGGATTGACCATTTGTACCCCTAATTCTGGACTTATTGGCACGAA 110869 | || | | || | ||| | ||||| || || ||| |||| |||| || | Sbjct 1116410 TCGGGACCAGCCCGTTGGAGTAGCCATTGGTGCCGGCAATGTAGGACCCGGTGGCGCGGA 1116469 Query 110870 TGTCGTGGATATGCATACCAATACCACCCGCCCACTTACTAATTTGTGCACACTCTGTGA 110929 ||| ||| | || | || || || || || ||| ||| | || |||| | Sbjct 1116470 TGTTGTGAACATTGAGGCCGATGCCGCCGGCGGTCTTGGAAATGAGGGCGCACTGGCGCA 1116529 Query 110930 GTGTACCATAAATACCATCAATCGAATCTGCCTTGTTGGCAATTAGAAAGCAAGAAGACA 110989 | || | ||||| ||||||||||| || |||| ||| | || |||||||| |||| Sbjct 1116530 GGGTGTCGTAAATGCCATCAATCGAGTCGTCCTTCATGGTGAGCAGGAAGCAAGACGACA 1116589 Query 110990 TCTGAGGACGAGGCGTTCCCGCA-TTGAAGAGTGTAGGTGTCGCATGAATGAACAGACCT 111048 ||| || || || | ||| || |||||||| || || | ||||| |||| | Sbjct 1116590 GCTGCGGCCGGGGAG-ACCCACAGTTGAAGAGGGTCGGCGAGGCATGCGTGAAGTAGCGC 1116648 Query 111049 TGGGACATCTTGTTGTATGTGTCGAGTGCGGAGGGTACATCTTTACCGTGAATACCAATG 111108 |||||||| | | ||| || || || |||| ||| | || | || || || || | | Sbjct 1116649 TGGGACATGTACTCGTAGGTCTCCAGGGCGGCGGGGATGTCGCTGCCATGGATGCCGACG 1116708 Query 111109 GCAACTCGCATGAACATATATTGAGG 111134 || || ||||||| ||| || || || Sbjct 1116709 GCCACGCGCATGATCATGTACTGCGG 1116734 >seq7 Length=2157034 Score = 109 bits (120), Expect = 6e-19 Identities = 369/565 (65%), Gaps = 11/565 (2%) Strand=Plus/Minus Query 119508 TGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCCAGGCATGAGTCCT 119567 || ||||| || || || |||||||||||||| |||||| || || |||||||| || Sbjct 326667 TGGAGCCCCTCGTCACGGGAGATGAGCTCATTGCTGAAGGTCAGCCCGGGCATGAGGCCG 326608 Query 119568 CTTTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATGCCCTCCACACAG 119627 | ||||| ||||| |||||||| || || || ||||| ||||||||||| | Sbjct 326607 CGCTTCTTCAGCCAGAAGATGGCGGCGAAGGAGCCGGAGAAGAAAATGCCCTCCACGGCG 326548 Query 119628 GCGAAAGCGAATAGACGCTCAGCAAAAGGTCGA-GACTTG---TCGAACCACTTGAGAGC 119683 ||||| || | || ||| || ||||| || |||| | |||| ||| | || Sbjct 326547 GCGAAGGCCACCAGGCGCGTGGC-GAAGGTGGACGACTCGTCCTCGATCCAGCGCATGGC 326489 Query 119684 CCAGTTGGCCTTACGCTCTATGCAGGGGACAGTTTGGATGGCTTCGAAAAGTTGCTTCTT 119743 ||||| |||||| || | |||||||| || | |||||| |||| || || | Sbjct 326488 CCAGTCGGCCTTCTTCTTGACGCAGGGGATGGTCTCGATGGCGCCGAAGAGGTGGTCGCG 326429 Query 119744 TTCAGCACCATCCTTAATATATTTATCAATGAGTTTAGAGTAGGTCTCACCATGAACCAT 119803 || || ||||| | ||| | ||||| || ||||| |||| | || | | Sbjct 326428 CTCGGCCACATCCCGCACATAGGTGTCAATCAGCAGCGAGTACATCTCGCTGTGGATGTT 326369 Query 119804 TTCATTGTGTGA-CTGATAGGCATAAAATGAGCGAGCTTCGGAAATTTGCACTTCGTCAG 119862 || || | || ||| || | || || | || || |||| || ||||| || | Sbjct 326368 CTCGATG-GCGATCTGGAAGCCGTAGAAGCACCGGGCCTCGGCGATCTGCACCTCCGAGG 326310 Query 119863 CAAAATTGTTGTTGATATTTTCAAAAACAATTCCATCGGATCCAGCGAAGAATGCTAAGA 119922 || |||| | ||| ||| ||||| ||||| || | |||||||| || | | Sbjct 326309 AGAACCGGTTGACCAGATTCTCATTGACAATGCCATCCGACGCGGCGAAGAACGCCAGCA 326250 Query 119923 TGTACTTTATGAATTTCTGTTCATTATCGTTGAG--TGTT-TTCCAGTCGTCCATATCTT 119979 | ||||| | | | || || || | || |||| ||||||||||||| || Sbjct 326249 CATGGGAGATGAAGTACCGCTCGTTGGCGGTCAGCTTGTTGTTCCAGTCGTCCAGGTCGC 326190 Query 119980 TAGACAAGTCCACCTCTTCAGCTGTCCAGTTAGACATCTGTGCCTTTTTATAGAGTTCCC 120039 || | ||||||||| || || |||||| || || ||||| || || | | || Sbjct 326189 GGGAGAGGTCCACCTCCTCGGCGGTCCAGAAGGAGGCCTCGGCCTTCTTGTACATCTGCC 326130 Query 120040 AAAGTTCAGGATACTTCA-GGGGAA 120063 ||| ||| | |||| | |||||| Sbjct 326129 AAATCTCATGGTACTCGATGGGGAA 326105 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588974424489200