Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fonticula_20alba_20[genbank_20GCA_5F000388065.2_202014-04-24] 214 sequences; 31,296,464 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq5 145 9e-30 seq7 136 5e-27 seq11 87.8 2e-12 >seq5 Length=2316015 Score = 145 bits (160), Expect = 9e-30 Identities = 561/868 (65%), Gaps = 25/868 (3%) Strand=Plus/Plus Query 106457 GGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAA 106516 || ||||| || || |||| ||||| || ||| ||| || || ||||||| | Sbjct 1115878 GGCAGGGCAATGGAGGCCAGGTTGCACACGGCCACCTCGTCGTTGCTGGTGTACTGGACG 1115937 Query 106517 ATTTCTGTACACAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTTTTG 106576 || || || || | ||| || | ||| || || || | ||||| ||||| ||| | | Sbjct 1115938 ATCTCGGTGCAGAGGTTCGAGCACTTGATGGTACCGAGGTTCTTCTGGTTGGACTTCTGG 1115997 Query 106577 TTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGACTTGAGAATT 106636 ||||| ||||||||||| | ||| |||| || || |||||| ||| | || | || Sbjct 1115998 TTGCAGGCATCCTTGTACATGATGAAGGGGGTGCCGGTCTCCACCTGGGCCTCCATGAT- 1116056 Query 106637 GCCTTCCACACATCGGCGGCTGGTAC--AATGGCGTT---GGCCCGTCCCTCCGCCTCGT 106691 ||| | | || | || ||||| | ||| | || ||| || ||||| | ||||| Sbjct 1116057 --CTTGCGC-CA-CAGCAGCTGGGCCTTCATGACCTTGCGGGCACGCCCCTCGGACTCGT 1116112 Query 106692 -ACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGC-GTCGGAGAGACCTGGTGCCTT 106749 || || |||||||| || |||||||| ||| || ||| || || || |||| Sbjct 1116113 AACGCTG-GTAGAGGGTCTCGAACTCCTC-GCCATAGCACTCGTGCAGGCCCGGGGCCTC 1116170 Query 106750 GTCTGGACAGAAAAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAAAGGTCTGG 106809 | || ||||| || ||||| | || || ||| || |||||||||||||| || || Sbjct 1116171 GCGCGGGCAGAACAGCGACCAGTCGCCGCCGGACTCCACGCGCTTCATGAAAAGATCCGG 1116230 Query 106810 AATCCACAGGGATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCG 106869 | |||||||| | ||||| || | |||| ||| ||| | || ||| || Sbjct 1116231 CACCCACAGGGCAAAGAAGAGGTCACGGGCACGAGTCTCCTCGGCGCCGGTGTTCTTGCG 1116290 Query 106870 TAACTCAAGGA---ACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGA 106926 | ||| | || ||||| | |||||||||||| ||||| || |||| || | | Sbjct 1116291 CAGCTCGATGAAGGACTCC---ACATCCGCGTGCCAGGGCTCCAGGTAGATGGCAAACGC 1116347 Query 106927 TCC----CTTTCGACGCCCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAA 106982 || | | | | ||| | || | || || ||||| ||||| || || || || | Sbjct 1116348 GCCGGGGCGCTTGTTG-CCACCCTGGTCGACGTAACGCGCGGTGGCATTGAACACACGCA 1116406 Query 106983 GCATTGGAATAATACCATCTGATTGACCATTTGTCCCCCGAATACGAGATTTATTGGCTC 107042 |||| || | | || | || | ||||| || || ||| || |||| | Sbjct 1116407 GCATCGGGACCAGCCCGTTGGAGTAGCCATTGGTGCCGGCAATGTAGGACCCGGTGGCGC 1116466 Query 107043 TCACATCATGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCG 107102 | | || | | | || || || || || ||| || || | || |||| Sbjct 1116467 GGATGTTGTGAACATTGAGGCCGATGCCGCCGGCGGTCTTGGAAATGAGGGCGCACTGGC 1116526 Query 107103 TAAGAGTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGG 107162 || || | || || || | || ||||| ||||| ||| || ||||||||| | Sbjct 1116527 GCAGGGTGTCGTAAATGCCATCAATCGAGTCGTCCTTCATGGTGAGCAGGAAGCAAGACG 1116586 Query 107163 ACATCTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATAC 107222 ||| |||||| | || | ||| ||||||||||| || | || || |||| | Sbjct 1116587 ACAGCTGCGGCCGGGGAGACCCACAGTTGAAGAGGGTCGGCGAGGCATGCGTGAAGTAGC 1116646 Query 107223 CTTGGGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGA 107282 |||||||| | ||||| ||||||| | | | ||||| || |||||||||| Sbjct 1116647 GCTGGGACATGTACTCGTAGGTCTCCAGGGCGGCGGGGATGTCGCTGCCATGGATGCCGA 1116706 Query 107283 TGGCCACACGCATAAACATGTATTGGGG 107310 |||||| ||||| | |||||| || || Sbjct 1116707 CGGCCACGCGCATGATCATGTACTGCGG 1116734 >seq7 Length=2157034 Score = 136 bits (150), Expect = 5e-27 Identities = 337/502 (67%), Gaps = 12/502 (2%) Strand=Plus/Minus Query 116986 TAGTCCCCAACTCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCATA 117045 ||||| || || |||||||| |||||||||||||| || | || || || | ||||| Sbjct 326967 TAGTCACCGACGCGCTTCTCGAAGAAGTTGGTCTTGCCCTGGAGACTGATCATGTCCATG 326908 Query 117046 AAGTCAAATGGATTCTTCGCGTTCCAAA--TGGGTGGCACCCCAACTTGTTTGAGGAGAC 117103 ||||| || || |||| |||||| | | | | |||| || | || || || | Sbjct 326907 AAGTCGAAGGGGTTCTCCGCGTTGTAGACCTTCG-GGCAGCCGAGCTCCACC-AGCAGGC 326850 Query 117104 GATCCGACACATACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGATGAGATTAC 117163 | || | |||| |||| ||||||| | |||| || |||||| ||||| || | Sbjct 326849 GGTCGGCCACAAACTCGATGTACTGGCACATGAGGTCGCCGTTCATGCCGATCAGGCGAA 326790 Query 117164 ATGGGAGTGCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCACGATGGCGT 117223 || || || || || |||| | ||||| || | |||||||| | | || |||| Sbjct 326789 CGGGCAGGGCCTCGGTGAGGAACTCCTTCTCGATGACCACCGCCTCGCTGATGAGGGCGG 326730 Query 117224 GGATAGTTTCGGTAGTGGGTCT--ATTACGCAAAGT-CTTGAAGAGCTC-CACGGCAAAC 117279 ||| || | |||| | | | | | || | ||||||| |||| | || Sbjct 326729 TGATGGTGGCCACGCTGGGCCGGGAGTTC---AGGTGCGAGAAGAGCAGGCACG-CGAAG 326674 Query 117280 TCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATG 117339 || |||||| ||||| || ||||| || || ||||| |||| || || |||||| Sbjct 326673 TCGCAGTGGAGCCCCTCGTCACGGGAGATGAGCTCATTGCTGAAGGTCAGCCCGGGCATG 326614 Query 117340 AGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCC 117399 || || |||||||||| ||| | || ||| ||| || ||||||||||| || |||||| Sbjct 326613 AGGCCGCGCTTCTTCAGCCAGAAGATGGCGGCGAAGGAGCCGGAGAAGAAAATGCCCTCC 326554 Query 117400 ACACACGCAAACGCAAAAAGGCGCTCGGCGAAGGAGCGAGACTTTGTGTCAAACCATTTC 117459 || || || || | |||||| |||||||| | |||| || | ||| | Sbjct 326553 ACGGCGGCGAAGGCCACCAGGCGCGTGGCGAAGGTGGACGACTCGTCCTCGATCCAGCGC 326494 Query 117460 ATTGCCCATTTCGCCTTCTTCT 117481 || ||||| | |||||||||| Sbjct 326493 ATGGCCCAGTCGGCCTTCTTCT 326472 >seq11 Length=637296 Score = 87.8 bits (96), Expect = 2e-12 Identities = 117/160 (73%), Gaps = 2/160 (1%) Strand=Plus/Plus Query 169361 CTTCCCACGGAGAGGAAAGACGCCATAGTGATCACGTCCAACGACGGAGAGACCCGCGAC 169420 ||| || || || || ||||| || |||| || || || |||||| || || | || Sbjct 467732 CTTGCCTCGCAGGGGGAAGACACCGTAGTAGTCGCGGCCGACGACGACCAGGCCGGACAC 467791 Query 169421 CGCAAGGGTTTTCGCTGAATCACCCTCCGTGACAATGAGGGTACACTT-TCCAGATTGCG 169479 || |||| || || || ||||||||||| | |||||||| ||||| | |||||| Sbjct 467792 GGCCAGGGCCTTGGCCGAGTCACCCTCCGTCAGGATGAGGGTGCACTTGTGGGAATTGCG 467851 Query 169480 CCGTACCCGCCTTGTTTGCGTCGTCCAACTTGGGAATACC 169519 ||| || |||| ||| |||||||||| |||||| || || Sbjct 467852 -CGTGCCGGCCTGGTTGGCGTCGTCCAGCTTGGGGATGCC 467890 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589979221801360