Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fonticula_20alba_20[genbank_20GCA_5F000388065.2_202014-04-24] 214 sequences; 31,296,464 total letters Query= NC_017940.1 Length=127732 Score E Sequences producing significant alignments: (Bits) Value seq2 122 7e-23 >seq2 Length=3916072 Score = 122 bits (134), Expect = 7e-23 Identities = 181/257 (70%), Gaps = 6/257 (2%) Strand=Plus/Minus Query 29779 GGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCCACGTGATCCAGGTAGACGTGAGCGTCT 29838 ||||| | || |||||| |||||||| || || || | | ||| || || | ||| Sbjct 3896373 GGCTCGCGCTTGAGCTGCTCCTTCAGCGCATCAACATGGTTCTTGTACACATGGGTGTCA 3896314 Query 29839 CCCAGGGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTG 29898 |||| | |||||| | ||| ||||| || || ||| || || |||| | |||| Sbjct 3896313 CCCATGATGTGGATCAGCTCACCCGGCCGGAGGCCAGTGCAATGGGCAATCAGGCACGTC 3896254 Query 29899 AGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTCCCCCGACCTCTGG 29958 || || | |||||||||||||| || || || |||||||| | || | ||| | |||| Sbjct 3896253 AGCAGCGCATAGCTGGCGATGTTGAATGGCACACCGAGCCCAAGATCACACGAGCGCTGG 3896194 Query 29959 TAGAGCTGACACGAGAGCTCTC------CGTCGCTCACGTAAAACTGACACATGGTGTGG 30012 |||| ||| || || ||||| | || | ||||||||||||| ||| |||| Sbjct 3896193 TAGAACTGGCAGGACAGCTCGCCACGCTCGATGTTCACGTAAAACTGGGCCATCAGGTGG 3896134 Query 30013 CACGGAGGAAGAGCCAT 30029 || ||||| |||||||| Sbjct 3896133 CAGGGAGGGAGAGCCAT 3896117 Score = 100 bits (110), Expect = 2e-16 Identities = 118/150 (79%), Gaps = 10/150 (7%) Strand=Plus/Plus Query 52051 AGATGGGCGACAAGTTTGCGTCGT-TCACGGCGCAAAAGGGGAC-GTGCGGAGCCGTCCT 52108 |||| |||||||||||||| ||| |||||| ||| ||||| || ||| | | | ||| Sbjct 915194 AGATCGGCGACAAGTTTGCCTCGCGTCACGG-GCAGAAGGGCACCGTGGGCATCA--CCT 915250 Query 52109 GACC--CAGGAGGACATGCCCTTCGACA-AGGACGGGGTGGTGCCCGACCTCATCATCAA 52165 ||| |||||||||||||||||| ||| |||| || | ||||| ||||| |||||||| Sbjct 915251 -ACCGGCAGGAGGACATGCCCTTC-ACAGAGGAGGGCATTGTGCCGGACCTGATCATCAA 915308 Query 52166 CCCCCACGCCTTTCCATCCAGGATGACCGT 52195 ||||| ||| |||| || | |||||||| Sbjct 915309 TCCCCATGCCATTCCTTCGCGAATGACCGT 915338 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408616534274222