Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fonticula_20alba_20[genbank_20GCA_5F000388065.2_202014-04-24] 214 sequences; 31,296,464 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq5 374 2e-98 seq7 298 1e-75 >seq5 Length=2316015 Score = 374 bits (414), Expect = 2e-98 Identities = 1158/1772 (65%), Gaps = 76/1772 (4%) Strand=Plus/Plus Query 212553 ACCGTAAACTGTACTGGATCAGCAGCAGCCTTGGTGCGTAGATAGTACATGCCGGTCTTT 212612 ||||| |||| | | || || || | ||||||||| || || |||||||||||||| Sbjct 1114963 ACCGTGAACTTGATGGCCTCGGCCGCGGGCTTGGTGCGCAGGTAATACATGCCGGTCTTG 1115022 Query 212613 AGGCCCTTGCCCCAGCCGTGCATGTGCATTGCTGTGAGTTTCTTCAGCTTAATATTCTGG 212672 |||||||| |||||| | | |||||| | || | | ||| | || Sbjct 1115023 AGGCCCTTCTTCCAGCCATAGAAGTGCATGGAAGTCAAC-----CGGCTGGCGGTG--GG 1115075 Query 212673 TCATCCTCGTGGCCCAGATGTAG--GTTCAGGGACTGACTCTGGTCTATGAATGGGGCCC 212730 |||| | |||| || ||||||| ||| ||||| || ||||| | ||| Sbjct 1115076 -----CTCG-----CCGATGAAGATGTTCAGGCTCTGGCTCTGATCGATGAAGGCACCCC 1115125 Query 212731 TGTCAGCGGCCATGTCTATGATATCTCTCTGGGAGAGCTCCCACACGGTCTTGAAGATTT 212790 ||| ||||||||||| ||||| | |||| || |||||| ||||||| ||| Sbjct 1115126 GGTCGGCGGCCATGTCGATGATGGACCGCTGGCTGATCTCCCAGGTGGTCTTGTAGAGGG 1115185 Query 212791 CTTTGAGGTCCTCTGGGAAGCCGGGGATGTTCTGCACAGACCC-CCTGTGT--ATGGTCA 212847 | || ||||| || |||| | || | ||| || || || || | | ||| ||| Sbjct 1115186 CCTTCAGGTCATCGGGGATGGAAGGCACCCGCTGGACGGAGCCACCGGCGGCGATGATCA 1115245 Query 212848 GCTGCAGGCGCATGTCCTCGTTCCAGAGGCCCCTGGTCTCCAGGCACTTGACCAGGTGAG 212907 |||| || |||| | |||| | || || ||| ||||| |||||| | Sbjct 1115246 TCTGCCGGACATTGTCAT---TCCACACCCCAATGCGAATGAGGTCCTTGATCAGGTGGG 1115302 Query 212908 GGTTGACTATCTGGAAGTCACCTGAGAGCACCCTCCTCTGGTAAAAGTTTGAAGTGTAGG 212967 ||||||| |||||||| || || || ||||| | | || | ||| || ||||||| Sbjct 1115303 GGTTGACCATCTGGAACTCCCCGGACAGCACACGACGGACATAGATGTTGGAGGTGTAGG 1115362 Query 212968 GCTCGATGCTCTCGTTGTTCCCCAGAATCTGTGCAGTGCTGGCTGTGGGCATGGGAGCCA 213027 ||||||||| ||| ||| || || ||||| | ||| ||| || ||||| || |||| Sbjct 1115363 GCTCGATGCACTCATTGAAGCCGAGGATCTGCGAGGTGGAGGCCGTCGGCATCGGGGCCA 1115422 Query 213028 CCAGGAGACTGTTCCTCACTCCGTGCTCGCCGATGAGGCGCCGAAGCTCTGCCCAGTCCC 213087 ||||||| ||| | || || || | ||| | | || | ||||| |||| Sbjct 1115423 CCAGGAGCGAGTTACGCAGGCCATGACGAGCAATGCGCTCCTTCAGGCCGGCCCAATCCC 1115482 Query 213088 ATCTGCCAGACAGGTCCTCGTCCTTCACGTTCCACATGTCAAACTGCAAGATGCCTTTGC 213147 | | | | || || |||| ||||| ||| ||||| | | || | | Sbjct 1115483 ACCGGTCGGAGGGGG---------TCACACCCCACAGGTCGAACTGGA-GCTGGCCGGCC 1115532 Query 213148 TCA-CGGGGCTGCCCTGGTAAGAGGAGTAGGGGCC-ATGCTCCTTGGCCAGCTCGCAGGA 213205 | | ||| |||| ||| |||| || ||||| | || | | |||| || |||||| Sbjct 1115533 GAAGCCGGGGACCCCTCGTACGAGGCATACGGGCCGACGCGC-TCGGCCGTCTGGCAGGA 1115591 Query 213206 CGCCTGCAGGGCAGCGTAGTAGATGGTTTCAAATATCTCCCTGTTGAGCTTCTTGGCCTC 213265 ||||| | || ||| |||||||||| || || || || ||||||| ||||| Sbjct 1115592 CGCCTCGACCGCCGCGAAGTAGATGGTCTCGAAGATGGCCTTGTTGAGGGCACGCGCCTC 1115651 Query 213266 TGGGGACGTGAAGGGCAT---CATCATGCGTTGGAACACATCAGCCAGCCCCTGGACCCC 213322 ||| | ||| ||||| ||||||| ||||| ||| ||||| |||||||| || Sbjct 1115652 CGGGCTCTCGAACGGCATGCGCATCATGAT---GAACAGATCGGCCAGGCCCTGGACACC 1115708 Query 213323 GATGCCGATGGGTCTGTGTCTCAGGTTAGACTTGGAGCACTCCTCCAAGGGGTAAAAGTT 213382 |||||| || || | ||| | ||||| || || | |||||||| ||||| |||| Sbjct 1115709 GATGCCAATCGGCCGGTGACGGAGGTTGGAGTTCCGGGCCTCCTCCACCGGGTAGTAGTT 1115768 Query 213383 GCAGTCGATGATCTTGTTGAGGTTGCGGGTGGCCACTTTGGTGACATGGGCCAGGTACTC 213442 | ||||||||| | ||||| |||| | || |||||| | ||| | ||| Sbjct 1115769 GATGTCGATGATGCGATCCAGGTTCCGGGCCACGACCCCGGTGACGGTGCGCAGCTTCTC 1115828 Query 213443 ---GTGATTGAACACGTAGCCCCCGTCC-----------TGCACAAACTCAGGCAGGGCG 213488 || || ||| | ||||| ||| || | ||||| |||||||| Sbjct 1115829 AAAGTCATACGACATG--GCCCCGGTCTCCGGGCAGGTGTGGATAAACTGCGGCAGGGCA 1115886 Query 213489 ATGCTGGCCAGGTTGCAAACGGCCACCTCCTGAGAGTCTGTGTACTCCATGATCTCGGTG 213548 ||| |||||||||||| ||||||||||| | | ||||||| | |||||||||| Sbjct 1115887 ATGGAGGCCAGGTTGCACACGGCCACCTCGTCGTTGCTGGTGTACTGGACGATCTCGGTG 1115946 Query 213549 CACAGGTTGCTGCATCGGATGGTGCCCAGGTTCTGGTGGTTTGACTTTGCGTTGGCAGAA 213608 || ||||| ||| |||||| || ||||||| ||||| ||||| |||| | | Sbjct 1115947 CAGAGGTTCGAGCACTTGATGGTACCGAGGTTCTTCTGGTTGGACTTCTGGTTGCAGGCA 1116006 Query 213609 TCCTTGTAGAGCATGTAGGGGGACCCGGTCTCTAGCTGGGACACCAGTATCTGGCTCCAG 213668 |||||||| | ||| |||||| |||||||| | ||||| | ||| |||| || ||| Sbjct 1116007 TCCTTGTACATGATGAAGGGGGTGCCGGTCTCCACCTGGGCCTCCATGATCTTGCGCCAC 1116066 Query 213669 AGGTACCTGGCCTTGACCACCCGCCTGACAGCTCCGGGCGTAGCCTCGTACTGTTCGTAG 213728 || | |||||| | ||| | | || | || || | |||||| | | |||| Sbjct 1116067 AGCAGCTGGGCCTTCATGACCTTGCGGGCA-CGCCCCTCGGA--CTCGTAACGCTGGTAG 1116123 Query 213729 AGCTCGTTGAATTCGTGGCCCCAGACCCTGTCCAGTCCCGGA-CAGGATGCGGGACACAT 213787 || | ||| || | ||| || | || ||| ||||| | ||||| || | Sbjct 1116124 AGGGTCTCGAACTCCTCGCCATAGCACTCGTGCAGGCCCGGGGCCTCGCGCGGG-CAGAA 1116182 Query 213788 GAGGCTCCAGTCCCCGTCAT-CTCTGACTCTCTGCATGAACAGGTCCGGGACCCACAGCG 213846 || |||||| ||| | ||| || | || |||||| || ||||| |||||||| | Sbjct 1116183 CAGCGACCAGTCGCCGCCGGACTCC-ACGCGCTTCATGAAAAGATCCGGCACCCACAGGG 1116241 Query 213847 CGGTGAACAGGTCCCTGGTCCTCCTCTCGTCCACTCCAGAGTTTTTGCGCAGATCTAGAA 213906 | ||| ||||| | || | |||| || | || | ||| |||||||| || | | Sbjct 1116242 CAAAGAAGAGGTCACGGGCACGAGTCTCCTCGGCGCCGGTGTTCTTGCGCAGCTCGATGA 1116301 Query 213907 AGTCAAAGATGTCCGCGTGCCACGGCTCCATGTAGATGGCAAAGGCGCCCGGCCTCTTG- 213965 || | ||||||||||| ||||||| |||||||||||| ||||| || | |||| Sbjct 1116302 AGGACTCCACATCCGCGTGCCAGGGCTCCAGGTAGATGGCAAACGCGCCGGGGCGCTTGT 1116361 Query 213966 --CCGCCCTGGTCCACCAGCCTGGCCACCATGTTGAAGATGCGCAGGACGGGTACCAGCC 214023 || |||||||| || | || ||||| | ||||| | || ||||||| Sbjct 1116362 TGCCACCCTGGTCGACGTAACGCGCGGTGGCATTGAACACACGCAGCATCGGGACCAGCC 1116421 Query 214024 CGTTGGACTGTCCGTTGGTTCCCGCTATATACGAGCCGGAGGCCCTCAGGTTGCTCATGG 214083 ||||||| | || ||||| || || || || || |||| ||| | | |||| | Sbjct 1116422 CGTTGGAGTAGCCATTGGTGCCGGCAATGTAGGACCCGGTGGCGCGGATGTTGTGAACAT 1116481 Query 214084 AGAGCCCTATGCCACCGGCGTACTTGGAGATCATGGCGCAGCGCCTCACAGTCTCCATGA 214143 ||| || ||||| |||||| |||||| || | |||||| | | || || || | Sbjct 1116482 TGAGGCCGATGCCGCCGGCGGTCTTGGAAATGAGGGCGCACTGGCGCAGGGTGTCGTAAA 1116541 Query 214144 TGCCGGCCATGCTGTCATCTGTGAGGTTCAGCAAGAAGCAGCTCGAGAGCTGGGGCCTGG 214203 |||| | || ||| || | | | | |||| |||||| ||| ||||| |||| || Sbjct 1116542 TGCCATCAATCGAGTCGTCCTTCATGGTGAGCAGGAAGCAAGACGACAGCTGCGGCCGGG 1116601 Query 214204 ACGAGCCAGAGTTGAAAAGCGTGGGGCTGGCATGGATCATAAACTTG---TTAGAGAGGA 214260 || ||| ||||||| || || || |||||| | | || | | | || | | Sbjct 1116602 GAGACCCACAGTTGAAGAGGGTCGGCGAGGCATG---CGTGAAGTAGCGCTGGGACATGT 1116658 Query 214261 GCCTGTAGGTCTCCAGGACTGAGGGGATGTCG 214292 | ||||||||||||| | | |||||||||| Sbjct 1116659 ACTCGTAGGTCTCCAGGGCGGCGGGGATGTCG 1116690 >seq7 Length=2157034 Score = 298 bits (330), Expect = 1e-75 Identities = 577/845 (68%), Gaps = 16/845 (2%) Strand=Plus/Minus Query 47839 CTGGTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTC 47898 ||||||||| || || | ||||| |||||||| ||||| |||| | ||| | || Sbjct 326971 CTGGTAGTCACCGACGCGCTTCTCGAAGAAGTTGGTCTTGCCCTGGAGACTGATCATGTC 326912 Query 47899 CATGAAGAGGAAGGGGTTGGGTGTGTTATACACC--CGTGTCAGGCCCATCTGTTCCAGC 47956 ||||||| ||||||||| | ||| || ||| || | ||| || | || ||||| Sbjct 326911 CATGAAGTCGAAGGGGTTCTCCGCGTTGTAGACCTTCGGG-CAG-CCGAGCTCCACCAGC 326854 Query 47957 AGGTGATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGAGG 48016 ||| | || || || |||||||||| | |||||||| | ||||||||| || ||| Sbjct 326853 AGGCGGTCGGCCACAAACTCGATGTACTGGCACATGAGGTCGCCGTTCATGCCGATCAGG 326794 Query 48017 GACACGGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAATC 48076 ||||||| |||| ||||| ||||||||||| || ||| || || | | | Sbjct 326793 CGAACGGGCAGGGCCTCGGTGAGGAACTCCTTCTCGATGACCACCGCCTCGCTGATGAGG 326734 Query 48077 TGCTTAACGCGGGACTCTGAGGGTTTGTTGCGCAGGTGCTTGGCATAGAGCATGCAGGCA 48136 | | | || | | ||| | | ||||||| | |||||| ||| || Sbjct 326733 GCGGTGATGGTGGCCACGCTGGGCCGGGAGTTCAGGTGCGAGA---AGAGCAGGCACGCG 326677 Query 48137 AAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGGC 48196 ||||| | ||| | || ||||| ||| ||||||| | ||| |||| || || ||| Sbjct 326676 AAGTCGCAGTGGAGCCCCTCGTCACGGGAGATGAGCTCATTGCTGAAGGTCAGCCCGGGC 326617 Query 48197 ATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCCC 48256 |||| || | || || |||||||| || || ||||| ||||| |||||||| |||||| Sbjct 326616 ATGAGGCCGCGCTTCTTCAGCCAGAAGATGGCGGCGAAGGAGCCGGAGAAGAAAATGCCC 326557 Query 48257 TCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTGAGATCCAG 48316 ||||| || ||||| || || | | |||| | | || ||| ||||||| Sbjct 326556 TCCACGGCGGCGAAGGCCACCAGGCGCGTGGCGAAGGTGGACGACTCGTCCTCGATCCAG 326497 Query 48317 GAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGCCCGGAAGAGC 48376 | |||||||| ||||||||||||| ||| || || ||||| ||||| | |||||| Sbjct 326496 CGCATGGCCCAGTCGGCCTTCTTCTTGACGCAGGGGATGGTCTCGATGGCGCCGAAGAGG 326437 Query 48377 TTCTTGCACTCACCTGCGTCCGCAACATAGGT---AGTGAGCAGCTTTGCGTACATCTCA 48433 | | || ||| | | ||| |||||||| | | |||||| | ||||||||| Sbjct 326436 TGGTCGCGCTCGGCCACATCCCGCACATAGGTGTCAATCAGCAGC---GAGTACATCTCG 326380 Query 48434 GAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAACACCTGC 48493 ||| | ||||| || ||||||||||| ||||||||| || |||||| | |||| Sbjct 326379 CTGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAGAAGCACCGGGCCTCGGCGATCTGC 326320 Query 48494 ACTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGAAGCAGCAAAG 48553 || || | |||||| | | | ||||||||||||||| || ||||| || || || ||| Sbjct 326319 ACCTCCGAGGAGAACCGGTTGACCAGATTCTCATTGACAATGCCATCCGACGCGGCGAAG 326260 Query 48554 AAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAG---AGCATTCCAGCCC 48610 || || || ||||| | ||| | ||||||||| ||| || |||||| | Sbjct 326259 AACGCCAGCACATGGGAGATGAAGTACCGCTCGTTGGCGGTCAGCTTGTTGTTCCAGTCG 326200 Query 48611 TGTACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACGCGAGTGCTTTTTTG 48670 | | ||| | |||||||| || || | ||||||||||| || || || ||| Sbjct 326199 TCCAGGTCGCGGGAGAGGTCCACCTCCTCGGCGGTCCAGAAGGAGGCCTCGGCCTTCTTG 326140 Query 48671 TACAT 48675 ||||| Sbjct 326139 TACAT 326135 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931530308149760