Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fonticula_20alba_20[genbank_20GCA_5F000388065.2_202014-04-24] 214 sequences; 31,296,464 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq7 271 1e-67 seq5 233 4e-56 >seq7 Length=2157034 Score = 271 bits (300), Expect = 1e-67 Identities = 580/861 (67%), Gaps = 26/861 (3%) Strand=Plus/Plus Query 25474 GATATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGAT 25533 || || ||| |||||||||||||||| | ||| |||||||||||| ||| | || Sbjct 326123 GAGATTTGGCAGATGTACAAGAAGGCCGAGGCCTCCTTCTGGACCGCCGAGGAGGTGGAC 326182 Query 25534 CTGGCCAAGGACATGGACGGCTGGTACGCT---CTATCCAAAGACGAGCAGCATTTTCTC 25590 || || ||| |||||| |||| || || || |||||| | | || || Sbjct 326183 CTCTCCCGCGACCTGGACGACTGGAACAACAAGCTGACCGCCAACGAGCGGTACTTCATC 326242 Query 25591 AAGTACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAG 25650 | ||| |||| ||||| || || || ||||| || || || ||||||||| | | Sbjct 326243 TCCCATGTGCTGGCGTTCTTCGCCGCGTCGGATGGCATTGTCAATGAGAATCTGGTCAAC 326302 Query 25651 AGATTCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGCC 25710 | ||| || ||| |||||| || |||||| ||| |||||||| |||||||| ||| Sbjct 326303 CGGTTCTCCTCGGAGGTGCAGATCGCCGAGGCCCGGTGCTTCTACGGCTTCCAGATCGCC 326362 Query 25711 ATCGAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGATG---ACGTACATTACAGAC 25767 ||||| || | ||| ||| |||| | ||| ||||| || || | || Sbjct 326363 ATCGAGAACATCCACAGCGAGATGTACTC---GCTGCTGATTGACACCTATGTGCGGGAT 326419 Query 25768 GTCGCCGAGAGAGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGAAG 25827 || |||||| | || | || || || ||||||||| ||| ||| || |||||| |||| Sbjct 326420 GTGGCCGAGCGCGACCACCTCTTCGGCGCCATCGAGACCATCCCCTGCGTCAAGAAGAAG 326479 Query 25828 GCGCGGTGGGCCATGAAGTGGATCAACAGCCAGAGCGCTACGTTTGGCGAGCGGCTGGTA 25887 || ||||||||| |||||| | | || | || || | | ||| ||||| Sbjct 326480 GCCGACTGGGCCATGCGCTGGATCGAGGACGAGTCGTCCACCTTCGCCACGCGCCTGGTG 326539 Query 25888 GCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCTGGCTC 25947 ||||| || || ||||||||||| || ||| ||| || || || |||||||||||||| Sbjct 326540 GCCTTCGCCGCCGTGGAGGGCATTTTCTTCTCCGGCTCCTTCGCCGCCATCTTCTGGCTG 326599 Query 25948 AAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACGAG 26007 ||| || || ||||||||||||| ||| ||| ||||||||| | | |||||| Sbjct 326600 AAGAAGCGCGGCCTCATGCCCGGGCTGACCTTCAGCAATGAGCTCATCTCCCGTGACGAG 326659 Query 26008 GGTCTCCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTG--CTCCACAAACCTT 26065 || |||||| | || || || |||||||||| | || ||| || |||| | || Sbjct 326660 GGGCTCCACTGCGACTTCGCGTGCCTGCTCTTCTCG---CACCTGAACTCC-CGGCCCAG 326715 Query 26066 CTCAAGAGACCGTCTACAGTATCATCAAAGAGGCTGTGGAGATCGAGAAGGAGTTTCNNN 26125 | | ||| || | |||||| ||||| |||| |||||||||||||| | Sbjct 326716 C-GTGGCCACCATCACCGCCCTCATCAGCGAGGCGGTGGTCATCGAGAAGGAGTTCCTCA 326774 Query 26126 NNNNNNNNNNNNNNNNNNNNNNNNTGGGCATGAACAACAGACTCATGAGCCAATACATTG 26185 | ||||||||| | |||||| |||| ||||| | Sbjct 326775 CCGAGGCCCTGCCCGTTCGCCTGATCGGCATGAACGGCGACCTCATGTGCCAGTACATCG 326834 Query 26186 AGTATGTGGCCGACCATCTGCTGTGCCAGCTGGGACTCGCCAGA--CTCTACAGTACGCC 26243 ||| ||||||||||| |||||| |||| || || ||| || |||||| || Sbjct 326835 AGTTTGTGGCCGACCGCCTGCTGGTGGAGCTCGG-CT-GCCCGAAGGTCTACAACGCGGA 326892 Query 26244 TAACCCGTTCGACTTTATGGAAAACAT-ATC-GT-TGGAAGGGAAGACCAACTTCTTTGA 26300 ||||| |||||||| |||| |||| ||| || | | || |||||||||||||| || Sbjct 326893 GAACCCCTTCGACTTCATGG---ACATGATCAGTCTCCAGGGCAAGACCAACTTCTTCGA 326949 Query 26301 AAAGAGGGTCGGCGACTATCA 26321 ||| | ||||| ||||| || Sbjct 326950 GAAGCGCGTCGGTGACTACCA 326970 >seq5 Length=2316015 Score = 233 bits (258), Expect = 4e-56 Identities = 584/875 (67%), Gaps = 19/875 (2%) Strand=Plus/Plus Query 221702 AGGGCAACGCTGGCCAGGTTACACACGGCCACCTCGTCCTTGTTGGTATACTGTATGATC 221761 ||||||| | ||||||||| ||||||||||||||||| ||| |||| ||||| | |||| Sbjct 1115881 AGGGCAATGGAGGCCAGGTTGCACACGGCCACCTCGTCGTTGCTGGTGTACTGGACGATC 1115940 Query 221762 TCTGTACAGAGGTTGCTGCACTTGATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTG 221821 || || |||||||| |||||||||||| || |||| || || || ||||| | ||| Sbjct 1115941 TCGGTGCAGAGGTTCGAGCACTTGATGGTACCGAGGTTCTTCTGGTTGGACTTCTGGTTG 1116000 Query 221822 GCAGCGTCCTTGTAGAGCATAAAGGGACCGCCAGTCTCCAGCTGAGCCACCAGAATCTTG 221881 || |||||||| | || ||||| ||| ||||||| ||| ||| ||| |||||| Sbjct 1116001 CAGGCATCCTTGTACATGATGAAGGGGGTGCCGGTCTCCACCTGGGCCTCCATGATCTTG 1116060 Query 221882 TCCCAGAGTTCTCTGGCGCTCACCGTCCTCTTGACTGCA---CCCTCGGTCTTTTCATAC 221938 ||| || |||| || | | | |||| ||| ||||||| | || || Sbjct 1116061 CGCCACAG-CAGCTGG-GC-CTTCATGACCTTGCGGGCACGCCCCTCGGAC---TCGTAA 1116114 Query 221939 CCGGTATAGAGCATGTCAAACTTTTCACCGTACGCCTCGTCCAGGCCTGGACACCTGGCG 221998 | ||||| | || |||| || || || ||||| |||||| || ||| ||| Sbjct 1116115 CGCTGGTAGAGGGTCTCGAACTCCTCGCCATAGCACTCGTGCAGGCCCGG-GGCCTCGCG 1116173 Query 221999 -GGACACATCAGACTCCAGTGCTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGAT 222057 || || | ||| ||||| | | | || | || |||||| || ||||| | Sbjct 1116174 CGGGCAGAACAGCGACCAGTCGCCGCCGGACTCCACGCGCTTCATGAAAAGATCCGGCAC 1116233 Query 222058 CCACAGCGCCTGAAAGAGATCTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAG 222117 |||||| || ||||| || | || || |||||| ||||| |||| || | ||| Sbjct 1116234 CCACAGGGCAAAGAAGAGGTCACGGGCACGAGTCTCCTCGGCGCCGGTGTTCTTGCGCAG 1116293 Query 222118 ATC---CAAAAACTCAAAAATGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCC 222174 || || |||| | | || |||||||| |||||||| |||| ||| | ||||| Sbjct 1116294 CTCGATGAAGGACTCCACA---TCCGCGTGCCAGGGCTCCAGGTAGATGGCAAACGCGCC 1116350 Query 222175 GGGTCGCTTGTTGCCACCCTGATCCACCATCCTCTCCAGAGCGTTGAAGATGCGAAGGGT 222234 ||| ||||||||||||||||| || || | | | || ||||| | || || | Sbjct 1116351 GGGGCGCTTGTTGCCACCCTGGTCGACGTAACGCGCGGTGGCATTGAACACACGCAGCAT 1116410 Query 222235 CGGTACCAGTCCGTTGGATCGACCGTTGGTGCCCTTAATGTACGCACCGCCGGCCCTCAG 222294 ||| ||||| |||||||| || |||||||| |||||| | ||| ||| | | Sbjct 1116411 CGGGACCAGCCCGTTGGAGTAGCCATTGGTGCCGGCAATGTAGGACCCGGTGGCGCGGAT 1116470 Query 222295 GTTACTGGCAGACATGCCGATACCACCGGCGTGTTTCGAGATCATGGCGCAGCTCTTG-A 222353 ||| || | |||||| || |||||| || || || | |||||| || | | Sbjct 1116471 GTTGTGAACATTGAGGCCGATGCCGCCGGCGGTCTTGGAAATGAGGGCGCA-CTGGCGCA 1116529 Query 222354 GAGTGTCCATGATGCCCTCCATAGAGTCCTCCTTGACGTTCAGCAGAAAACAAGACGACA 222413 | ||||| ||||| || || ||||| ||||| | | | ||||| || |||||||||| Sbjct 1116530 GGGTGTCGTAAATGCCATCAATCGAGTCGTCCTTCATGGTGAGCAGGAAGCAAGACGACA 1116589 Query 222414 TCTGAGATTTGGTGGAACAGGCGTTAAACAGCGTGGGACTGGCGTGTGTAAAGTAGCCCC 222473 ||| | || || | ||| || || || || ||| || || ||||||| | Sbjct 1116590 GCTGCGGCCGGGGAGACCCACAGTTGAAGAGGGTCGGCGAGGCATGCGTGAAGTAGCGCT 1116649 Query 222474 TAGACATCAGATCGTACGTCTCTACGACTCTGGCGATGTTGTCCCCGTGAATCTGCATGG 222533 ||||| ||||| ||||| | | | || ||||| | || || || | || Sbjct 1116650 GGGACATGTACTCGTAGGTCTCCAGGGCGGCGGGGATGTCGCTGCCATGGATGCCGACGG 1116709 Query 222534 CGCATCTCATGTACATGTACTGGGGCCTCTCCACA 222568 | | |||| ||||||||| || | ||| ||| Sbjct 1116710 CCACGCGCATGATCATGTACTGCGGGCGCTCGACA 1116744 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928842315340160