Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fonticula_20alba_20[genbank_20GCA_5F000388065.2_202014-04-24] 214 sequences; 31,296,464 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq7 136 5e-27 seq5 113 5e-20 >seq7 Length=2157034 Score = 136 bits (150), Expect = 5e-27 Identities = 337/502 (67%), Gaps = 12/502 (2%) Strand=Plus/Plus Query 65021 AGAAGAAGGCGAAATGGGCAATGAAATGGTTTGACACAAAGTCTCGCTCCTTCGCCGAGC 65080 |||||||||| | ||||| ||| ||| | || |||| | |||||||| || Sbjct 326472 AGAAGAAGGCCGACTGGGCCATGCGCTGGATCGAGGACGAGTCGTCCACCTTCGCCACGC 326531 Query 65081 GCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCATTCTGCGCTATTT 65140 |||| | || || || |||||||| || ||||||||||| || ||| ||| || | Sbjct 326532 GCCTGGTGGCCTTCGCCGCCGTGGAGGGCATTTTCTTCTCCGGCTCCTTCGCCGCCATCT 326591 Query 65141 ATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAATGAACTTATTTCCC 65200 ||| |||||||||| || |||||||| || || |||| ||||| || || |||| Sbjct 326592 TCTGGCTGAAGAAGCGCGGCCTCATGCCCGGGCTGACCTTCAGCAATGAGCTCATCTCCC 326651 Query 65201 GAGATGAGGGTCTCCACCAGGAGTTTGCCGTG-GAGCTCTTCAAG-ACTTTGCGTAAT-- 65256 | || ||||| |||||| || || | |||| ||||||| | || | | | | Sbjct 326652 GTGACGAGGGGCTCCACTGCGACTTCG-CGTGCCTGCTCTTCTCGCACCT---GAACTCC 326707 Query 65257 AGACCCACTACCGAAACTATCCACGCCATCGTGAAAGAGGCGGTTGAGATTGAGAAAGGG 65316 | |||| | || ||| |||| || | | |||||||| | || ||||| | | Sbjct 326708 CGGCCCAGCGTGGCCACCATCACCGCCCTCATCAGCGAGGCGGTGGTCATCGAGAAGGAG 326767 Query 65317 TTCATCTTGGACGCACTCCCATGTAATCTCATCGGTATGAACTCTGAGAAGATGTCCGAG 65376 ||| || || || || || | || ||||| |||||| || |||| | || Sbjct 326768 TTCCTCACCGAGGCCCTGCCCGTTCGCCTGATCGGCATGAACGGCGACCTCATGTGCCAG 326827 Query 65377 TACATTGAGTATGTGTCGGATCGTCTCCTCAAACAAGTTGGGGTGCCACCCA--TTTGGA 65434 ||||| |||| |||| | || || || || || | || |||| | | | | | Sbjct 326828 TACATCGAGTTTGTGGCCGACCGCCTGCT-GGTGGAGCTCGGCTGCC-CGAAGGTCTACA 326885 Query 65435 ACGCGAAGAATCCATTTGACTTTATGGAAAACATTAGCCTTGATGGGAAGACCAACTTCT 65494 ||||| |||| || || ||||| ||||| | || || || | || ||||||||||||| Sbjct 326886 ACGCGGAGAACCCCTTCGACTTCATGGACATGATCAGTCTCCAGGGCAAGACCAACTTCT 326945 Query 65495 TTGAGAAGCGAGTTGGGGACTA 65516 | |||||||| || || ||||| Sbjct 326946 TCGAGAAGCGCGTCGGTGACTA 326967 >seq5 Length=2316015 Score = 113 bits (124), Expect = 5e-20 Identities = 556/872 (64%), Gaps = 31/872 (4%) Strand=Plus/Minus Query 75211 CCCACAGTACATGTTCATGCGGGTCGCAATCGGCATCCACGGGGAAGACATTGATTCTGT 75270 ||| ||||||||| ||||||| || || |||||||||| || ||||| | | Sbjct 1116735 CCCGCAGTACATGATCATGCGCGTGGCCGTCGGCATCCATGGCAGCGACATCCCCGCCGC 1116676 Query 75271 CTTGGAGACATACGACAAGATGTCCCAAGGTATGTTCATTCACGCAACACCAACCCTCTT 75330 | ||||||| ||||| | |||||||| | |||| || || | || |||||||| Sbjct 1116675 CCTGGAGACCTACGAGTACATGTCCCAGCGCTACTTCACGCATGCCTCGCCGACCCTCTT 1116616 Query 75331 CAATGCTGGTACACCAAGACCGCAGATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGGA 75390 ||| ||| | || | |||||| |||| ||||||||| || ||| ||||| || Sbjct 1116615 CAACTGTGGGTCTCCCCGGCCGCAGCTGTCGTCTTGCTTCCTGCTCACCATGAAGGACGA 1116556 Query 75391 CTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTGG 75450 ||| || | || || || | || || |||| || | || || ||| || || Sbjct 1116555 CTCGATTGATGGCATTTACGACACCCTGCGCCAGTGCGCCCTCATTTCCAAGACCGCCGG 1116496 Query 75451 GGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATTCGGGGGACAAA 75510 || || || | | | || | | | |||| || ||| || || || Sbjct 1116495 CGGCATCGGCCTCAATGTTCACAACATCCGCGCCACCGGGTCCTACATTGCCGGCACCAA 1116436 Query 75511 TGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATGT 75570 ||| | || | || | | || ||||| || || || || ||||| ||||| || || Sbjct 1116435 TGGCTACTCCAACGGGCTGGTCCCGATGCTGCGTGTGTTCAATGCCACCGCGCGTTACGT 1116376 Query 75571 AAATCAAGCGGGGCGTCGCAAGGGGTCCATCGCG------GTCTACTTGGAACCATGGCA 75624 | || ||| | |||| | || |||| ||||| |||| || ||||| Sbjct 1116375 CGACCA---GGGTGGCAACAAGCGCCCCGGCGCGTTTGCCATCTACCTGGAGCCCTGGCA 1116319 Query 75625 TGCCGATATCATGGAG---TTCCTTGAGTTACGACTCAACCAAGGTGACGAAGAGGCTCG 75681 || ||| ||||| ||| | ||| | || ||| || | ||| ||| |||| Sbjct 1116318 CGCGGAT---GTGGAGTCCTTCATCGAGCTGCGCAAGAACACCGGCGCCGAGGAGACTCG 1116262 Query 75682 GTGTAGAGATCTCTTTTCATCCCTGTGGATTCCAGACCTTTTCATGAAGCGGGTTGAGGA 75741 | || ||||| | |||||||| | || || |||||||||||||| || ||| Sbjct 1116261 TGCCCGTGACCTCTTCTTTGCCCTGTGGGTGCCGGATCTTTTCATGAAGCGCGTGGAGTC 1116202 Query 75742 GGGTGGTCAATGGTCTCTTTTCTGTCCAGACAAGGCACCAGGTCTCTCCGACGCGGT-GG 75800 || || | ||||| || ||||| || | |||| || || || ||| | | | | Sbjct 1116201 CGGCGGCGACTGGTCGCTGTTCTGCCCGCGCGAGGCCCCGGGCCTGCACGA-GTGCTATG 1116143 Query 75801 GTGAGGAGTTTGAAGCCCTCTACACAAAG-TATGAAGAGGAGGGTAGAGC---CAATGCG 75856 | |||||||| || |||||||| || | || || ||||| | || ||| | Sbjct 1116142 GCGAGGAGTTCGAGACCCTCTAC-CAGCGTTACGAGTCCGAGGGGCGTGCCCGCAAGGTC 1116084 Query 75857 ACTGTA---CCAGCCGCCGATGTTTGGAAGGCTATTCTCAAATCACAGACGGAGACTGGA 75913 | || | ||||| || | || | ||| || | | | ||| |||||| || Sbjct 1116083 A-TGAAGGCCCAGCTGCTG-TG-GCGCAAG---ATCATGGAGGCCCAGGTGGAGACCGGC 1116030 Query 75914 ACACCATATATGCTTTACAAGGATGCTTGTAACAAGAAGAGTAACCAAAAGAATTTGGGA 75973 || || | || | ||||||||||| || ||| ||||| ||||| ||||| | || Sbjct 1116029 ACCCCCTTCATCATGTACAAGGATGCCTGCAACCAGAAGTCCAACCAGAAGAACCTCGGT 1115970 Query 75974 ACAATCAAGAGCTCAAATCTTTGCACGGAAATTTTAGAGTACACAGATAAGGATGAGACG 76033 || |||||| |||| || || ||||| || || | ||||||| || || ||| | Sbjct 1115969 ACCATCAAGTGCTCGAACCTCTGCACCGAGATCGTCCAGTACACCAGCAACGACGAGGTG 1115910 Query 76034 GCTGTTTGCAATTTGGCATCAATCGCCCTTCC 76065 || || ||||| |||| || || ||||| || Sbjct 1115909 GCCGTGTGCAACCTGGCCTCCATTGCCCTGCC 1115878 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596568004176320