Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fonticula_20alba_20[genbank_20GCA_5F000388065.2_202014-04-24] 214 sequences; 31,296,464 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq5 134 4e-26 seq3 123 7e-23 seq2 95.1 4e-14 >seq5 Length=2316015 Score = 134 bits (148), Expect = 4e-26 Identities = 508/793 (64%), Gaps = 13/793 (2%) Strand=Plus/Plus Query 155587 CAATAGACGCCAGATTACATACCGCAGTCTCCTTGTCGTCGCTG---TATTCTACAATCT 155643 |||| || ||||| || || || || | ||| ||||| |||| || | || |||| Sbjct 1115885 CAATGGAGGCCAGGTTGCACACGGC---CACCTCGTCGTTGCTGGTGTACTGGACGATCT 1115941 Query 155644 CACAGCACAGGTTAGAACTCTTGATGGTGCCTAAATTCTTCTGGTTAGATTTACTGTTAC 155703 | ||| ||||| || | ||||||||| || | ||||||||||| || || ||| | Sbjct 1115942 CGGTGCAGAGGTTCGAGCACTTGATGGTACCGAGGTTCTTCTGGTTGGACTTCTGGTTGC 1116001 Query 155704 AAGCATCCTTGTATAGAATGTATGGGGTTCCTGTCTCCATCTGTGCGTCCAGAATCTTTA 155763 | ||||||||||| | ||| | ||||| || ||||||| ||| || |||| ||||| Sbjct 1116002 AGGCATCCTTGTACATGATGAAGGGGGTGCCGGTCTCCACCTGGGCCTCCATGATCTTGC 1116061 Query 155764 GCCAGAGGTCACGGGCATTAATTTGCTTGTTGTATCTGCCTTCCGACTCATATTTCATAT 155823 |||| || |||| || || |||| | | || || ||||| || | | Sbjct 1116062 GCCACAGCAGCTGGGCCTTCATGACCTTGCGGGCACGCCCCTCGGACTCGTAACGCTGGT 1116121 Query 155824 ACAGCGTTCGGTAATCCTCACCGTAACAATCACTCAGTCCAGGGCACTTATCGGGGCAAA 155883 | || || | | ||||| || || || || ||| || ||| || ||||| | Sbjct 1116122 AGAGGGTCTCGAACTCCTCGCCATAGCACTCGTGCAGGCCCGGGGCCTCGCGCGGGCAGA 1116181 Query 155884 ACAGCGACCAAATTTTATTACCGATT--ACACGCTCCATAAATACATCACTCGCCCAAAT 155941 ||||||||| | | | || | || |||| ||| || | ||| | |||| | Sbjct 1116182 ACAGCGACC--AGTCGCCGCCGGACTCCACGCGCTTCATGAAAAGATCCGGCACCCACAG 1116239 Query 155942 AGCATAGAAAAGGTCCCTTGCCTTTGACTCCTCATCGCCGTGATTCTTCCGTAGCTCTAA 156001 ||| |||| ||||| | || | |||||| ||||| ||||| || ||||| | Sbjct 1116240 GGCAAAGAAGAGGTCACGGGCACGAGTCTCCTCGGCGCCGGTGTTCTTGCGCAGCTCGAT 1116299 Query 156002 GAATTCCTCAATATCAGGATGGTGTGGCTCCAGATACATAGCAAAACTACC---ATTCCT 156058 ||| ||| | ||| | || |||||||| || || ||||| || | | Sbjct 1116300 GAAGGACTCCACATCCGCGTGCCAGGGCTCCAGGTAGATGGCAAACGCGCCGGGGCGCTT 1116359 Query 156059 CTTGCCACCCTGATCTACATACCGAGCAGTCTTATTGAAGACACCTAGCATAGGAATAAT 156118 ||||||||||| || || || || || || |||||| |||| ||||| || | | Sbjct 1116360 GTTGCCACCCTGGTCGACGTAACGCGCGGTGGCATTGAACACACGCAGCATCGGGACCAG 1116419 Query 156119 ACCATTGGAAGTGCCATTGGTTCCGCGAATATGCGAACCAGATGAGCGAACATTATGAAT 156178 || ||||| ||||||||| ||| ||| | || || | | ||| | || |||| Sbjct 1116420 CCCGTTGGAGTAGCCATTGGTGCCGGCAATGTAGGACCCGGTGGCGCGGATGTTGTGAAC 1116479 Query 156179 ATGTAGTCCAATACCACCTGACCATTTAGAAATTTGAGCGCATTCCTTTACAGTATTGAA 156238 || || || || || || | || ||||| | ||||| | | || | | | Sbjct 1116480 ATTGAGGCCGATGCCGCCGGCGGTCTTGGAAATGAGGGCGCACTGGCGCAGGGTGTCGTA 1116539 Query 156239 AATACCTTCAATAGAATCATCTTCCATTGATAGTAGATAGCACGAACTTAATTGAGGTCG 156298 ||| || ||||| || || || | ||| | || || |||| || | || || || Sbjct 1116540 AATGCCATCAATCGAGTCGTCCTTCATGGTGAGCAGGAAGCAAGACGACAGCTGCGGCCG 1116599 Query 156299 TGGTGTTCCAGCGTTGAATAGTGTAGGTGTTGCATGAATAAAATACTTATTAGACATATA 156358 || | ||| |||||| || || || | ||||| | || || | ||||| || Sbjct 1116600 GGGAGACCCACAGTTGAAGAGGGTCGGCGAGGCATGCGTGAAGTAGCGCTGGGACATGTA 1116659 Query 156359 ATCGTATGTCTCC 156371 ||||| |||||| Sbjct 1116660 CTCGTAGGTCTCC 1116672 >seq3 Length=3619281 Score = 123 bits (136), Expect = 7e-23 Identities = 214/305 (70%), Gaps = 12/305 (4%) Strand=Plus/Minus Query 302545 ACGGTCATATCATAACCAATCATAATGTCTTCCATACTCTTGATTAAACGACGCTGAATA 302604 |||||| |||||| | | ||| ||||| ||||| |||||| | |||||||| || Sbjct 1728773 ACGGTCCCATCATACCGGACCATGATGTCCTCCATGGCCTTGATCAGTCGACGCTGGATG 1728714 Query 302605 TAACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACGACCACCCATAGCA 302664 ||||| || | || || || || || ||||| || || ||||||||||||| | Sbjct 1728713 TAACCCGTCTCGGCGGTCTTGACGGCCGTGTCAATCAGCCCCTCACGACCACCCATGGTG 1728654 Query 302665 TGGAAGAATAGCT-CTTCCGGTCGTAGCCCCCCAATAAAGGAGCTCTCAACGAAACCACG 302723 |||||||| | || | || ||| | |||||| | || || |||||| ||||| ||||| Sbjct 1728653 TGGAAGAAGAACTCCATCGGGTTG-AGCCCCTCGATGTAGCTGCTCTCGACGAAGCCACG 1728595 Query 302724 CGCCTCGG---GCGAATCGTCGAACTTGGTAAAGTGTGGCAGGGTCCTGTTCTCATAGCC 302780 | |||| ||||||| |||||| ||||| |||||||||| | | |||| Sbjct 1728594 GGAATCGGCACTGAAATCGTC---CTTGGTGAAGTGCGGCAGGGTCCGATCCCGGAAGCC 1728538 Query 302781 GTATGGGATACGCTTTCCATCAACGTTCTGCTGTCCCAGGCA--CGAAATCATCTGCGAA 302838 | || || ||||| || || || || ||||| || | || || || ||||| ||| Sbjct 1728537 AAAGGGAATGCGCTTGCCCTCGACATTTTGCTGGCCGACACAGGCGGAA--ATCTGGGAA 1728480 Query 302839 ATATT 302843 ||||| Sbjct 1728479 ATATT 1728475 >seq2 Length=3916072 Score = 95.1 bits (104), Expect = 4e-14 Identities = 123/170 (72%), Gaps = 0/170 (0%) Strand=Plus/Minus Query 251488 CCGTGTGAAATCATACAATCACGCTCCATTTCACCGAAACGAAGACCACCATCGCGAGCC 251547 ||||| | || || ||||| |||||||| ||||||||||| ||||||||||| || || Sbjct 915695 CCGTGGGCGATAATGCAATCGCGCTCCATCTCACCGAAACGCAGACCACCATCACGCGCA 915636 Query 251548 CTACCCTCGGCAGGCTGACGAGTGAGATTAACCATAGGACCGATGGAGCGGCTATGTTGC 251607 | ||| || ||||| || || || | ||||| | ||| | || || | Sbjct 915635 CGACCTTCCATCGGCTGGCGCGTAAGCTGGACCATGCGGCCGCGTGCACGCGAGTGAATC 915576 Query 251608 TTATCATTTACCATATGCTTGAGACGCTGGTAGAATGCGGGACCGATGAA 251657 || |||| |||| |||||| |||||||||||||| | ||| |||| ||| Sbjct 915575 TTGTCATCGACCAGATGCTTCAGACGCTGGTAGAAGGTGGGCCCGAGGAA 915526 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471813564460118