Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fonticula_20alba_20[genbank_20GCA_5F000388065.2_202014-04-24] 214 sequences; 31,296,464 total letters Query= NC_026421.1 Length=182380 Score E Sequences producing significant alignments: (Bits) Value seq2 125 8e-24 >seq2 Length=3916072 Score = 125 bits (138), Expect = 8e-24 Identities = 282/417 (68%), Gaps = 10/417 (2%) Strand=Plus/Minus Query 147158 CCGCGGGGTTCCAGGCCGAGACCACCAGCCGCCTGCTCTCGGGGTTCCTCTTAATCTCTT 147217 ||||||| ||||||||||||| | | |||| | |||||| |||| || | Sbjct 3895975 CCGCGGGATTCCAGGCCGAGAAGAGAATGCGCCGGTCGGTGGGGTTGGTCTTGATGGTCT 3895916 Query 147218 CGATAACCCACCTCAGCTGGTCCACGCCCTGGCCCCCGTAGTTTGTCCCGCAGTCCACGT 147277 | || | | | |||||| ||||||| ||| ||||| || || |||| || Sbjct 3895915 CAATGATCTGGGCGATCTGGTCGACGCCCTTGCCGGTGTAGTCGGTGTCGGCGTCCTTGT 3895856 Query 147278 ACCTGGCCCCAAAGTGCCTCCACTGGAAGCCGTACACTGGCCCCAGGTCGCC---GGGCT 147334 || ||| |||||||||| |||||||||||| || | ||||| ||||| || | || Sbjct 3895855 ACTCGGCGCCAAAGTGCCGCCACTGGAAGCCATAAATGGGCCCAAGGTCCCCCTCGCGC- 3895797 Query 147335 TTCTGTGCGAGAAGCCCGCC-CGCTTGAGAAACTCGGGGGACCCGTGGGCGTCCCAGATG 147393 | ||| | | ||||| | | | || |||||| || || | | ||||||||||| Sbjct 3895796 --CGGTG-GTGCAGCCCTCGGCTGTCAAGGAACTCGCGGCTGCCATTGCCGTCCCAGATG 3895740 Query 147394 CCCACTCCCTTGGCGGAGAGCTCCTTAGAGTCCGTG-GAGCCCCGGATGAACCAGAGCAG 147452 | ||||| || ||||||||||| ||| ||| | || ||| | |||||||| ||| Sbjct 3895739 TGGATACCCTTCGCCGAGAGCTCCTTGCCGTCGGTGCGCGCGCCG-AGGAACCAGAACAG 3895681 Query 147453 CTCCTCCAAAACCCCCCTCCAAAAGACCCTCTTGGTGGTCAGCAGGGGGAACTGGTCCCT 147512 ||| || || || | ||| || || | ||||||||||| ||||||||| || | Sbjct 3895680 CTCTTCGGCCACACCGCGCCAGAAAACACGCTTGGTGGTCAACAGGGGGAAGGAATCGCG 3895621 Query 147513 CAGCGAATACCTCGCCTGGTCCCCAAACACAGACAGCGTGCCCGTGCCCGTCCTGTC 147569 ||| || || | ||| | ||||| | || ||| || || ||| |||| ||| Sbjct 3895620 CAGGGAGTAACGCGCGCTGCAGCCAAAGAGAGCCAGTGTCCCGACGCCGGTCCGGTC 3895564 Score = 95.1 bits (104), Expect = 1e-14 Identities = 167/242 (69%), Gaps = 6/242 (2%) Strand=Plus/Minus Query 146917 TTCAGGGGCTCCACGTGGTTGAGGTAGACGTGCGCGTCCCCCAGGGTGTGCACAAAGTCC 146976 ||||| | || || ||||| ||| || || | ||| |||| | |||| | | || Sbjct 3896352 TTCAGCGCATCAACATGGTTCTTGTACACATGGGTGTCACCCATGATGTGGATCAGCTCA 3896293 Query 146977 CCCGGCTTAAGGCCGGTCACGTGGGCCACCATGTAGGTGAGCAGCGAGTAGCTGGCTATG 147036 |||||| ||||| || ||||| | || | | || ||||||| |||||||| ||| Sbjct 3896292 CCCGGCCGGAGGCCAGTGCAATGGGCAATCAGGCACGTCAGCAGCGCATAGCTGGCGATG 3896233 Query 147037 TTGAAGGGGACCCCCAGGCCCATGTCCCCCGACCTCTGGTACAGCTGGCACGAGAGCTCC 147096 ||||| || || || || || | || | ||| | |||||| | |||||| || ||||| Sbjct 3896232 TTGAATGGCACACCGAGCCCAAGATCACACGAGCGCTGGTAGAACTGGCAGGACAGCTCG 3896173 Query 147097 CCG---TCGGC---CACGTAAAACTGGCACAGGATGTGGCACGGCGGCAGCGCCATGGCG 147150 || ||| ||||||||||||| || | |||||| || || || ||||| || Sbjct 3896172 CCACGCTCGATGTTCACGTAAAACTGGGCCATCAGGTGGCAGGGAGGGAGAGCCATCTCG 3896113 Query 147151 GG 147152 || Sbjct 3896112 GG 3896111 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583486439169600