Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fonticula_20alba_20[genbank_20GCA_5F000388065.2_202014-04-24] 214 sequences; 31,296,464 total letters Query= NC_027925.1 Length=496396 Score E Sequences producing significant alignments: (Bits) Value seq7 102 3e-16 seq5 87.8 6e-12 >seq7 Length=2157034 Score = 102 bits (112), Expect = 3e-16 Identities = 398/608 (65%), Gaps = 17/608 (3%) Strand=Plus/Plus Query 443270 GCGGTTCGTCTTGTTCCCCGTTCAGCATCCCGACATCTACGACATGTACAA-ACGACAAG 443328 ||| |||||| | |||||| | || | | || || | | |||||||| | | | | Sbjct 326092 GCGCTTCGTCCTCTTCCCCATCGAGTACCATGAGATTTGGCAGATGTACAAGAAGGCC-G 326150 Query 443329 TGGCCCAGTTTTGGACCATGGAGGAGATTGATCTCTCCAAGGACTTGGCCGATTGGAACG 443388 |||| || |||||| |||||| | || |||||| ||| ||| ||| |||||| Sbjct 326151 AGGCCTCCTTCTGGACCGCCGAGGAGGTGGACCTCTCCCGCGACCTGGACGACTGGAAC- 326209 Query 443389 AACGA-CTATCTAGCCATGAACGCGATTTCTTCAAATGCATCT--TGGCCTTCTTTGCAC 443445 ||| | || | | | || || | ||| || ||| | |||| ||||| || Sbjct 326210 AACAAGCTGACCGCCAACGAGCGGTACTTCATCTCC--CATGTGCTGGCGTTCTTCGCCG 326267 Query 443446 CGAGCGACGGTATCGTCGGTGAGAATCTGGTGACGCGTTTCTACGAAATGGTAGTGTACA 443505 || || || || ||| |||||||||||| | || |||| | ||| | | Sbjct 326268 CGTCGGATGGCATTGTCAATGAGAATCTGGTCAACCGGTTCTCCTCGGAGGTGCAGATCG 326327 Query 443506 CCGAGGCCCGCTACTTCTACGCGTTCCAAGCCGCAATGGAGAACATTCACGCCGAGGTCT 443565 |||||||||| | |||||||| ||||| ||| || |||||||| ||| |||| | | Sbjct 326328 CCGAGGCCCGGTGCTTCTACGGCTTCCAGATCGCCATCGAGAACATCCACAGCGAGATGT 326387 Query 443566 ACAGTCAGTTGATCAAGACACTAATTCCGA-ACGAAGACGAACAGCGGTC-CATCTTCTC 443623 || | | |||| | || ||| | || | | | ||| | ||| | | ||||| Sbjct 326388 ACTCGCTGCTGATTGACAC-CTATGTGCGGGATGTGGCCGAGC-GCGACCACCTCTTCGG 326445 Query 443624 ATCGTTCATGACCACGCCAGGCATCACTGAAAAGACTCGCTGGGCAAAACAGTGGCTCGA 443683 | || ||||| || || ||| | ||| | |||||| | | ||| |||| Sbjct 326446 CGCCATCGAGACCATCCCCTGCGTCAAGAAGAAGGCCGACTGGGCCATGCGCTGGATCGA 326505 Query 443684 --ACGAGAAAATCTCAGCTTCGTCGAGCGACTAGTCGCTTTTGCTGTGGTCGAAGGACTG 443741 ||||| || || ||||| | ||| || || || || || | || || || | Sbjct 326506 GGACGAGTCG-TC-CACCTTCGCCACGCGCCTGGTGGCCTTCGCCGCCGTGGAGGGCATT 326563 Query 443742 TTGTTTAGCGGCAGCTTTAGCCTCCATCTTCTGGTTGAAAAAGCGTGGACTTATGCACGG 443801 || || |||| ||| ||| ||||||||||| |||| ||||| || || |||| ||| Sbjct 326564 TTCTTCTCCGGCTCCTTC-GCCGCCATCTTCTGGCTGAAGAAGCGCGGCCTCATGCCCGG 326622 Query 443802 TCTGACCTTTAGTAACGAACTGATCAGTCGGGACGAGGGTTTGCATTGCGACTTCGCCTG 443861 |||||||| || || || || ||| || |||||||| | || ||||||||||| || Sbjct 326623 GCTGACCTTCAGCAATGAGCTCATCTCCCGTGACGAGGGGCTCCACTGCGACTTCGCGTG 326682 Query 443862 TCTTCTCT 443869 || |||| Sbjct 326683 CCTGCTCT 326690 >seq5 Length=2316015 Score = 87.8 bits (96), Expect = 6e-12 Identities = 149/211 (71%), Gaps = 4/211 (2%) Strand=Plus/Minus Query 254981 CCAATGATCCGTGTGTTCAACAACGTGGCTCGCTACGTCGATCAAGGGGGCGGCAAACGC 255040 || ||| | ||||||||||| | || || |||||||| || || ||| ||| ||| Sbjct 1116413 CCGATGCTGCGTGTGTTCAATGCCACCGCGCGTTACGTCGACCAGGGTGGCAACAAGCGC 1116354 Query 255041 CCAGGAGCGTTCACCATCTACCTGGAGCCGTGGCACGCCGACATTGAACGGTTTTTACTG 255100 || || ||||| |||||||||||||||| |||||||| || | || || | | Sbjct 1116353 CCCGGCGCGTTTGCCATCTACCTGGAGCCCTGGCACGCGGATGTGGAGTCCTTCATCGAG 1116294 Query 255101 CTGTCCGACAAGACCGGCACCGAGGAG-CTGATCGCCCGCGACATCTACACCGCTGTCT- 255158 ||| | | || |||||| |||||||| || | ||||| ||| ||| | || | | Sbjct 1116293 CTGCGCAAGAACACCGGCGCCGAGGAGACTCGT-GCCCGTGACCTCTTCTTTGCCCTGTG 1116235 Query 255159 GGTGCTGCGATCTGTTTATGCGACGCGTGGA 255189 ||||| | ||||| || ||| |||||||| Sbjct 1116234 GGTGCCG-GATCTTTTCATGAAGCGCGTGGA 1116205 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1588331644981230