Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fonticula_20alba_20[genbank_20GCA_5F000388065.2_202014-04-24] 214 sequences; 31,296,464 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq7 145 1e-29 seq5 143 3e-29 seq11 82.4 1e-10 >seq7 Length=2157034 Score = 145 bits (160), Expect = 1e-29 Identities = 339/502 (68%), Gaps = 12/502 (2%) Strand=Plus/Minus Query 122371 TAGTCCCCGACCCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCATA 122430 ||||| ||||| |||||||| |||||||||||||| || | || || || | ||||| Sbjct 326967 TAGTCACCGACGCGCTTCTCGAAGAAGTTGGTCTTGCCCTGGAGACTGATCATGTCCATG 326908 Query 122431 AAGTCAAATGGATTCTTCGCGTTCCAAA--TGGGTGGCACCCCAACTTGTTTGAGGAGAC 122488 ||||| || || |||| |||||| | | | | |||| || | || || || | Sbjct 326907 AAGTCGAAGGGGTTCTCCGCGTTGTAGACCTTCG-GGCAGCCGAGCTCCACC-AGCAGGC 326850 Query 122489 GATCCGACACATACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGATGAGGTTAC 122548 | || | |||| |||| ||||||| | |||| || |||||| ||||| ||| | Sbjct 326849 GGTCGGCCACAAACTCGATGTACTGGCACATGAGGTCGCCGTTCATGCCGATCAGGCGAA 326790 Query 122549 ATGGGAGTGCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCACGATGGCGT 122608 || || || || || |||| | ||||| || | |||||||| | | || |||| Sbjct 326789 CGGGCAGGGCCTCGGTGAGGAACTCCTTCTCGATGACCACCGCCTCGCTGATGAGGGCGG 326730 Query 122609 GGATAGTTTCGGTAGTGGGTCT--ATTACGCAAAGT-CTTGAAGAGCTC-CACGGCAAAC 122664 ||| || | |||| | | | | | || | ||||||| |||| | || Sbjct 326729 TGATGGTGGCCACGCTGGGCCGGGAGTTC---AGGTGCGAGAAGAGCAGGCACG-CGAAG 326674 Query 122665 TCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATG 122724 || |||||| ||||| || ||||| || || ||||| |||| || || |||||| Sbjct 326673 TCGCAGTGGAGCCCCTCGTCACGGGAGATGAGCTCATTGCTGAAGGTCAGCCCGGGCATG 326614 Query 122725 AGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCC 122784 || || |||||||||| ||| | || ||| ||| || ||||||||||| || |||||| Sbjct 326613 AGGCCGCGCTTCTTCAGCCAGAAGATGGCGGCGAAGGAGCCGGAGAAGAAAATGCCCTCC 326554 Query 122785 ACACACGCAAACGCAAAAAGGCGTTCGGCGAAGGAGCGAGACTTTGCATCAAACCATTTC 122844 || || || || | ||||| |||||||| | |||| | || | ||| | Sbjct 326553 ACGGCGGCGAAGGCCACCAGGCGCGTGGCGAAGGTGGACGACTCGTCCTCGATCCAGCGC 326494 Query 122845 ATTGCCCATTTCGCCTTCTTCT 122866 || ||||| | |||||||||| Sbjct 326493 ATGGCCCAGTCGGCCTTCTTCT 326472 >seq5 Length=2316015 Score = 143 bits (158), Expect = 3e-29 Identities = 561/869 (65%), Gaps = 25/869 (3%) Strand=Plus/Plus Query 111230 GGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAA 111289 || ||||| || || |||| ||||| || ||| ||| || || ||||||| | Sbjct 1115878 GGCAGGGCAATGGAGGCCAGGTTGCACACGGCCACCTCGTCGTTGCTGGTGTACTGGACG 1115937 Query 111290 ATTTCTGTACATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTG 111349 || || || || | ||| || | ||| || || || | ||||| ||||| ||||| | Sbjct 1115938 ATCTCGGTGCAGAGGTTCGAGCACTTGATGGTACCGAGGTTCTTCTGGTTGGACTTCTGG 1115997 Query 111350 TTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGAATA 111409 ||||| ||||||||||| | ||| |||| || || |||||| ||| | | | || Sbjct 1115998 TTGCAGGCATCCTTGTACATGATGAAGGGGGTGCCGGTCTCCACCTGGGCCTCCATGAT- 1116056 Query 111410 GCCTTCCAAACATCGGCGGCTGGTACA--ATGGCGTTG---GCCCGTCCCTCCGCCTCGT 111464 ||| | || | || ||||| | ||| | ||| || || ||||| | ||||| Sbjct 1116057 --CTTGCGC-CA-CAGCAGCTGGGCCTTCATGACCTTGCGGGCACGCCCCTCGGACTCGT 1116112 Query 111465 A-CTTTGTGTAGAGGGCTTCAAACTCCTCACCC-ACCGCGTCGGAGAGACCTGGTGCCTT 111522 | | || |||||||| || |||||||| || | | | ||| || || || |||| Sbjct 1116113 AACGCTG-GTAGAGGGTCTCGAACTCCTCGCCATAGCAC-TCGTGCAGGCCCGGGGCCTC 1116170 Query 111523 GTCTGGACAGAAAAGAGACCATTGACCACCTTCCTCAACCCGCTTCATGAAAAGGTCTGG 111582 | || ||||| || ||||| | || || ||| || |||||||||||||| || || Sbjct 1116171 GCGCGGGCAGAACAGCGACCAGTCGCCGCCGGACTCCACGCGCTTCATGAAAAGATCCGG 1116230 Query 111583 AATCCACAGGGATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCG 111642 | |||||||| | ||||| || | |||| ||| ||| | || ||| || Sbjct 1116231 CACCCACAGGGCAAAGAAGAGGTCACGGGCACGAGTCTCCTCGGCGCCGGTGTTCTTGCG 1116290 Query 111643 TAACTCAAGGAA---CTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGA 111699 | ||| | ||| ||||| |||||||||||| ||||| || |||| || | | Sbjct 1116291 CAGCTCGATGAAGGACTCCAC---ATCCGCGTGCCAGGGCTCCAGGTAGATGGCAAACGC 1116347 Query 111700 TCC----CTTTCGACGCCCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAA 111755 || | | | ||| | | || | || || ||||| ||||| || || || || | Sbjct 1116348 GCCGGGGCGCTTGTTGCC-ACCCTGGTCGACGTAACGCGCGGTGGCATTGAACACACGCA 1116406 Query 111756 GCATTGGAATAATACCATCTGATTGACCATTTGTCCCCCGAATACGAGATTTATTGGCTC 111815 |||| || | | || | || | ||||| || || ||| || |||| | Sbjct 1116407 GCATCGGGACCAGCCCGTTGGAGTAGCCATTGGTGCCGGCAATGTAGGACCCGGTGGCGC 1116466 Query 111816 TCACATCATGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCG 111875 | | || | | | || || || || || ||| || || | || |||| Sbjct 1116467 GGATGTTGTGAACATTGAGGCCGATGCCGCCGGCGGTCTTGGAAATGAGGGCGCACTGGC 1116526 Query 111876 TAAGAGTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGG 111935 || || | || || || | || ||||| ||||| ||| || ||||||||| | Sbjct 1116527 GCAGGGTGTCGTAAATGCCATCAATCGAGTCGTCCTTCATGGTGAGCAGGAAGCAAGACG 1116586 Query 111936 ACATCTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATAC 111995 ||| |||||| | || | ||| ||||||||||| || | || || |||| | Sbjct 1116587 ACAGCTGCGGCCGGGGAGACCCACAGTTGAAGAGGGTCGGCGAGGCATGCGTGAAGTAGC 1116646 Query 111996 CTTGGGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGA 112055 |||||||| | ||||| ||||||| | | | ||||| || |||||||||| Sbjct 1116647 GCTGGGACATGTACTCGTAGGTCTCCAGGGCGGCGGGGATGTCGCTGCCATGGATGCCGA 1116706 Query 112056 TTGCGACCCGCATGAACATGTACTGTGGG 112084 || || ||||||| ||||||||| ||| Sbjct 1116707 CGGCCACGCGCATGATCATGTACTGCGGG 1116735 >seq11 Length=637296 Score = 82.4 bits (90), Expect = 1e-10 Identities = 115/159 (72%), Gaps = 2/159 (1%) Strand=Plus/Plus Query 182697 TTACCGCGAAGTGGGAACACACCGTAGTGATCACGACCAACGACAGAGAGACCCGCAACC 182756 || || || || ||||| |||||||||| || || || ||||| || || | || Sbjct 467733 TTGCCTCGCAGGGGGAAGACACCGTAGTAGTCGCGGCCGACGACGACCAGGCCGGACACG 467792 Query 182757 GCGAGGGTTTTCGCCGAATCACCCTCCGTGACAATGAGAGTACACTT-TCCAGATTGTGC 182815 || |||| || ||||| ||||||||||| | ||||| || ||||| | |||| | Sbjct 467793 GCCAGGGCCTTGGCCGAGTCACCCTCCGTCAGGATGAGGGTGCACTTGTGGGAATTGCG- 467851 Query 182816 CGTACCCGCCTTGTTCGCGTCATCCAACTTGGGAATACC 182854 ||| || |||| ||| ||||| |||| |||||| || || Sbjct 467852 CGTGCCGGCCTGGTTGGCGTCGTCCAGCTTGGGGATGCC 467890 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628030320014400