Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fonticula_20alba_20[genbank_20GCA_5F000388065.2_202014-04-24] 214 sequences; 31,296,464 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq5 118 1e-21 seq7 98.7 1e-15 seq11 84.2 3e-11 >seq5 Length=2316015 Score = 118 bits (130), Expect = 1e-21 Identities = 555/871 (64%), Gaps = 29/871 (3%) Strand=Plus/Minus Query 104221 CCCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACATTGATTCTGT 104280 ||| ||||||||| |||||||||||||| |||| || ||||| ||||| | | Sbjct 1116735 CCCGCAGTACATGATCATGCGCGTGGCCGTCGGCATCCATGGCAGCGACATCCCCGCCGC 1116676 Query 104281 CTTGGAGACATACGACAAGATGTCCCAAGGTATGTTCATTCACGCAACACCAACCCTCTT 104340 | ||||||| ||||| | |||||||| | |||| || || | || |||||||| Sbjct 1116675 CCTGGAGACCTACGAGTACATGTCCCAGCGCTACTTCACGCATGCCTCGCCGACCCTCTT 1116616 Query 104341 CAATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGGA 104400 ||| ||| | || | || || |||| ||||||||| || ||| ||||| || Sbjct 1116615 CAACTGTGGGTCTCCCCGGCCGCAGCTGTCGTCTTGCTTCCTGCTCACCATGAAGGACGA 1116556 Query 104401 CTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTGG 104460 ||| || | || || || | || || |||| || | || || ||| || || Sbjct 1116555 CTCGATTGATGGCATTTACGACACCCTGCGCCAGTGCGCCCTCATTTCCAAGACCGCCGG 1116496 Query 104461 GGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATTCGGGGGACAAA 104520 || || || | | | || | | | |||| || ||| || || || Sbjct 1116495 CGGCATCGGCCTCAATGTTCACAACATCCGCGCCACCGGGTCCTACATTGCCGGCACCAA 1116436 Query 104521 TGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATGT 104580 ||| | || | || | | || ||||| || || || || ||||| ||||| || || Sbjct 1116435 TGGCTACTCCAACGGGCTGGTCCCGATGCTGCGTGTGTTCAATGCCACCGCGCGTTACGT 1116376 Query 104581 AAATCAAGCTGGGCGTCGAAAG----GGATCTATCGCAGTCTATCTTGAGCCATGGCACG 104636 | || | | ||| | | | || | | || |||| || ||||| ||||||| Sbjct 1116375 CGACCAGGGT-GGCAACAAGCGCCCCGGCGCGTTTGCCATCTACCTGGAGCCCTGGCACG 1116317 Query 104637 CGGATATCATGGAG---TTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAGGCGCGGT 104693 ||||| ||||| ||| | ||| |||| ||| || | ||||||| | || Sbjct 1116316 CGGAT---GTGGAGTCCTTCATCGAGCTGCGCAAGAACACCGGCGCCGAGGAGACTCGTG 1116260 Query 104694 GCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGA 104753 ||| || ||||||| || || ||| | || ||||| ||||||||| | || ||| Sbjct 1116259 CCCGTGACCTCTTCTTTGCCCTGTGGGTGCCGGATCTTTTCATGAAGCGCGTGGAGTCCG 1116200 Query 104754 GTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCTGGTCTCTCCGA-TGCCGTGGGT 104812 | ||| | ||||| || || || || | |||| || || || ||| ||| | || Sbjct 1116199 GCGGCGACTGGTCGCTGTTCTGCCCGCGCGAGGCCCCGGGCCTGCACGAGTGCTAT-GGC 1116141 Query 104813 GAGGAGTTTGAAGCCCTTTACACAAAG-TACGAGGAAGAAGGTCGGGCGACTGCGACG-- 104869 |||||||| || |||| ||| || | |||||| || || || || | || | | Sbjct 1116140 GAGGAGTTCGAGACCCTCTAC-CAGCGTTACGAGTCCGAGGGGCGTGC--CCGCAAGGTC 1116084 Query 104870 -----GTGCCAGCTGCCGATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTA 104924 | |||||||| |||| | ||| || | || | || ||||| || | Sbjct 1116083 ATGAAGGCCCAGCTGC---TGTGGCGCAAG--ATCATGGAGGCCCAGGTGGAGACCGGCA 1116029 Query 104925 CACCATACATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTG 104984 | || | ||| | ||||| || ||||| ||||| ||| || || ||||| | ||| Sbjct 1116028 CCCCCTTCATCATGTACAAGGATGCCTGCAACCAGAAGTCCAACCAGAAGAACCTCGGTA 1115969 Query 104985 TGATCAAGAGTTCCAATCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGG 105044 |||||| | || || ||||| || || ||| | | | || ||| || ||| || Sbjct 1115968 CCATCAAGTGCTCGAACCTCTGCACCGAGATCGTCCAGTACACCAGCAACGACGAGGTGG 1115909 Query 105045 CTGTGTGTAACCTCGCATCAATCGCTCTCCC 105075 | ||||| ||||| || || || || || || Sbjct 1115908 CCGTGTGCAACCTGGCCTCCATTGCCCTGCC 1115878 Score = 86.0 bits (94), Expect = 7e-12 Identities = 110/149 (74%), Gaps = 2/149 (1%) Strand=Plus/Minus Query 105795 TCATTGACATGGCCGCAGATCGTGGTCGCTTCATTGATCAAAGTCAAAGTATGAATCTCT 105854 |||| ||||||||||| || || ||| |||||| ||||| || || || |||| ||| Sbjct 1115146 TCATCGACATGGCCGCCGACCGGGGTGCCTTCATCGATCAGAGCCAGAGCCTGAACATCT 1115087 Query 105855 TCAT-GGAAAGTCCAACGATGTCCAAGCTCTCTTCTATGCACATGTACAGTTGGAAGAAG 105913 |||| || || ||| || || | | |||| |||||| | || | ||||||||| Sbjct 1115086 TCATCGGCGAGCCCACCGCCAGCCG-GTTGACTTCCATGCACTTCTATGGCTGGAAGAAG 1115028 Query 105914 GGTCTCAAAACGGGGATGTATTACCTCCG 105942 || ||||| || || ||||||||||| || Sbjct 1115027 GGCCTCAAGACCGGCATGTATTACCTGCG 1114999 >seq7 Length=2157034 Score = 98.7 bits (108), Expect = 1e-15 Identities = 92/117 (79%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 94828 GTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGT 94887 || ||||| || |||||||| || |||||| ||| || | ||||| |||||||| || Sbjct 326552 GTGGAGGGCATTTTCTTCTCCGGCTCCTTCGCCGCCATCTTCTGGCTGAAGAAGCGCGGC 326611 Query 94888 CTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGGGACTCCAC 94944 |||||||| || || |||| ||| ||||| ||||| ||||||||||| |||||| Sbjct 326612 CTCATGCCCGGGCTGACCTTCAGCAATGAGCTCATCTCCCGTGACGAGGGGCTCCAC 326668 >seq11 Length=637296 Score = 84.2 bits (92), Expect = 3e-11 Identities = 116/160 (73%), Gaps = 2/160 (1%) Strand=Plus/Plus Query 169348 CTTCCCACGAAGAGGGAAGACACCGTAGTGATCACGACCAACGACGGAGAGACCCGCGAC 169407 ||| || || || |||||||||||||||| || || || |||||| || || | || Sbjct 467732 CTTGCCTCGCAGGGGGAAGACACCGTAGTAGTCGCGGCCGACGACGACCAGGCCGGACAC 467791 Query 169408 TGCGAGAGTCTTCGCCGAGTCACCCTCGGTGACGATGAGCGTACA-TTTTCCAGATTGTG 169466 || || | ||| |||||||||||||| || | |||||| || || || | |||| | Sbjct 467792 GGCCAGGGCCTTGGCCGAGTCACCCTCCGTCAGGATGAGGGTGCACTTGTGGGAATTGCG 467851 Query 169467 CCGTACCCGCCTTGTTCGCATCATCCAATTTGGGAATACC 169506 ||| || |||| ||| || || |||| ||||| || || Sbjct 467852 -CGTGCCGGCCTGGTTGGCGTCGTCCAGCTTGGGGATGCC 467890 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583259239777360