Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fonticula_20alba_20[genbank_20GCA_5F000388065.2_202014-04-24] 214 sequences; 31,296,464 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq5 136 1e-26 seq3 114 4e-20 seq1 114 4e-20 >seq5 Length=2316015 Score = 136 bits (150), Expect = 1e-26 Identities = 460/714 (64%), Gaps = 7/714 (1%) Strand=Plus/Plus Query 349197 CCGCTATAGGAATCGATTTAGGTACTACTTATTCTTGTGTTGCTGTTTGGCAAAATGATC 349256 ||||| | || |||||| | || || || || || || |||| ||| ||||| || |||| Sbjct 1716376 CCGCTGTCGGTATCGATCTTGGCACCACCTACTCCTGCGTTGGTGTCTGGCAGAACGATC 1716435 Query 349257 GTGTAGAAATAATTGCAAATGATCAAGGTAACAGAACAACGCCATCATACGTTGCATTTA 349316 |||| || || ||||| || || || |||||| | || || | || ||||| || || | Sbjct 1716436 GTGTTGAGATCATTGCCAACGACCAGGGTAACCGCACCACCGCCTCGTACGTCGCCTTCA 1716495 Query 349317 CCGAAACTGAGCGTATGATTGGTGATTCTGCAAAAAATCAAGCTGCTGCTAATCCAAAAA 349376 |||| | |||||| | || |||||| | || || || | || || || | | Sbjct 1716496 CCGACTCCGAGCGTCTCATCGGTGATGCCGCCCGCAACCAGGTCGCCATGAACCCGGAGA 1716555 Query 349377 ATACGGTTTTTGATGCTAAGCGACTTATTGGTAGAAGTTTTTCTGACAAATCTACACAAT 349436 | || || || || || ||||| || || ||| | | || || ||||| || | Sbjct 1716556 ACACCGTCTTCGACGCCAAGCGCCTCATCGGTCGCAAGTTCTCCGACAAGGAGGTCCAGT 1716615 Query 349437 CTGATCTAAAACATTTTCCTTTTACTGTTGTTCCAAAAGACGGTGATAAACCAATTATTG 349496 | || | || || | || || | || | || ||| || || || || Sbjct 1716616 CCGACATGAAGCACTGGCCCTTCAAGGTCATCGACAAGGACACC---AAGCCCATCATCC 1716672 Query 349497 AGGTTGAATATAAAGGTGAACAAAAACAATTTTTACCC--GAAGAAATTTCATCAATGGT 349554 |||| || | ||||| | | | || |||| || || || || || ||| | Sbjct 1716673 AGGTCGAGTTCCGCGGTGAGGTCA--CCACCTTCACCCCGGAGGAGATCTCCTCCATGAT 1716730 Query 349555 TTTAGTTAAAATGAAGGAAATTGCTGAAGCATATTTAGGTGAAACAGTAACTGATGCTGT 349614 | | || || |||||||| | || || | || | ||| | || || || || || Sbjct 1716731 TCTGGTCAAGATGAAGGAGACCGCCGAGTCCTACCTCGGTCGCGCCGTCACCGACGCCGT 1716790 Query 349615 TATTACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAG 349674 | || || || ||||| || || || |||||||| || || || ||||| || Sbjct 1716791 CGTCACCGTCCCCGCCTACTTCAACGACGCCCAGCGCCAGGCCACCAAGGATGCCGGTGC 1716850 Query 349675 CATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCATA 349734 ||| || || | || || || | || || || || ||||| || || || ||||| || Sbjct 1716851 CATCGCTGGCCTGAACGTCCTGCGTATCATCAACGAGCCCACCGCCGCCGCCATTGCCTA 1716910 Query 349735 TGGGCTTGATAAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGTGGTGG 349794 || || || || | | | || || | || | || || || ||| | |||||||| Sbjct 1716911 CGGTCTCGACAAGAAGGGCGAGGGCGAGATGAACGTCCTGATCTTCGATCTCGGTGGTGG 1716970 Query 349795 TACTTTTGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAACTGC 349854 ||| || ||||| || || || || | || || || || || || || || || || || Sbjct 1716971 TACCTTCGATGTGTCCCTCCTGACCATCGACGACGGTATCTTCGAGGTCAAGGCCACCGC 1717030 Query 349855 TGGTGATACACATCTTGGTGGAGAAGATTTTGATAATCGTCTCGTTTCGCATTT 349908 |||||| || || || ||||| || || || || || || || ||| | || || Sbjct 1717031 TGGTGACACTCACCTCGGTGGTGAGGACTTCGACAACCGCCTGGTTGCCCACTT 1717084 >seq3 Length=3619281 Score = 114 bits (126), Expect = 4e-20 Identities = 138/188 (73%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 140550 TTTTGAATATTATAATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATT 140609 || || || || || || || | || || ||||| || || || || || || || || Sbjct 1037340 TTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAAATC 1037399 Query 140610 AGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCA 140669 || || ||||||||||| || || || || || |||||||| ||||| || || || Sbjct 1037400 AGGCGCTGCTGATCAGGGGGGATACCCTCCTTGTCCTGAATCTTAGCCTTGACGGCGTCG 1037459 Query 140670 ATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAA 140729 ||||| ||||| || ||||| ||||| || | ||||| ||||| || || || || ||| Sbjct 1037460 ATCGAGTCAGAGGGCTCAACCTCAAGGGTGATGGTCTTACCGGTAAGGGTCTTAACGAAA 1037519 Query 140730 ATCTGCAT 140737 |||||||| Sbjct 1037520 ATCTGCAT 1037527 >seq1 Length=4772237 Score = 114 bits (126), Expect = 4e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 140510 ACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGA 140569 ||||||||| | | || ||||| || || || || || || || || || || || || Sbjct 1125476 ACCACCACGCAGGCGGAGGACAAGGTGGAGGGTGGAGTCCTTCTGGATGTTGTAGTCCGA 1125417 Query 140570 TAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGG 140629 | || || || || || || || || || || || || || || ||||||||||| || Sbjct 1125416 GAGGGTACGGCCGTCCTCGAGCTGCTTGCCGGCGAAAATCAGGCGCTGCTGATCAGGGGG 1125357 Query 140630 AATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAAC 140689 || || || || |||||||| ||||| || || ||| || || ||||| || || || Sbjct 1125356 GATACCCTCCTTGTCCTGAATCTTAGCCTTGACGGCATCGATGGAGTCAGAGGGCTCGAC 1125297 Query 140690 TTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || || || | ||||| ||||| || || || || || |||||||| Sbjct 1125296 CTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 1125249 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515250245361842