Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fonticula_20alba_20[genbank_20GCA_5F000388065.2_202014-04-24] 214 sequences; 31,296,464 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq5 217 2e-51 seq11 100 3e-16 seq3 93.3 5e-14 >seq5 Length=2316015 Score = 217 bits (240), Expect = 2e-51 Identities = 533/788 (68%), Gaps = 30/788 (4%) Strand=Plus/Minus Query 53180 CCTCAGTATCTTTTCATGCGCGTCGCCTTGGGTATCCACGGTGACGAC-TACACGCGTGT 53238 || ||||| | |||||||||| ||| | || ||||| || |||| | | ||| | Sbjct 1116734 CCGCAGTACATGATCATGCGCGTGGCCGTCGGCATCCATGGCAGCGACATCCCCGCC-GC 1116676 Query 53239 CCGTGAGACGTACGACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTT 53298 || ||||| ||||| | ||| ||| ||||| ||||| ||| |||| ||||| || Sbjct 1116675 CCTGGAGACCTACGAGTACATGTCCCAGCGCTACTTCACGCATGCCTCGCCGACCCTCTT 1116616 Query 53299 CAACGCTGGTACGAATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGA 53358 |||| ||| | | || ||| ||||| ||||||||| | | |||||||| || Sbjct 1116615 CAACTGTGGGTCTCCCCGGCCGCAGCTGTCGTCTTGCTTCCTGCTCACCATGAAGGACGA 1116556 Query 53359 CTCGATCGACGGCATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGG 53418 |||||| || ||||| ||||| || || |||| |||| ||| |||||| | || Sbjct 1116555 CTCGATTGATGGCATTTACGACACCCTGCGCCAGTGCGCCCTCATTTCCAAGACCGCCGG 1116496 Query 53419 TGGTATCGGTATCCACTGCTCG-AACGTCCGTGCGAACGGCACACCAATCAAGGGGACGA 53477 || ||||| || | || || ||| |||| || | ||| | || || || | Sbjct 1116495 CGGCATCGGCCTCAA-TGTTCACAACATCCGCGCCACCGGGTCCTACATTGCCGGCACCA 1116437 Query 53478 ACGGCGTCGCCGATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACG 53537 | ||| | || | || | || || ||||| || || ||||| ||| || || |||| Sbjct 1116436 ATGGCTACTCCAACGGGCTGGTCCCGATGCTGCGTGTGTTCAATGCCACCGCGCGTTACG 1116377 Query 53538 TCAACCAGGGTGGTGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACG 53597 || |||||||||| |||||| || |||| ||||||||||| ||||| ||||||| Sbjct 1116376 TCGACCAGGGTGGCAACAAGCGCCCCGGCGCGTTTGCCATCTACCTGGAGCCCTGGCACG 1116317 Query 53598 CCGACATTATGGAGT--TTC-TCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCT 53654 | || | |||||| ||| |||||||||| ||| || | ||| |||| || Sbjct 1116316 CGGA---TGTGGAGTCCTTCATCGAGCTGCGCAAGAACACCGGCGCCGAGGAGACTCGTG 1116260 Query 53655 GCCGTGACCTGTTTACAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGG 53714 ||||||||| || || |||||| | ||||| || |||||| | |||||| | Sbjct 1116259 CCCGTGACCTCTTCTTTGCCCTGTGGGTGCCGGATCTTTTCATGAAGCGCGTGGAGTCCG 1116200 Query 53715 ACGAGGAGTGGTACCTGATGTGCCCGAACGAGTGCCCCGGCCTCCA-GGGTGTCTACGGT 53773 || || |||| ||| | |||||| |||| ||| ||||| || | ||| ||| || Sbjct 1116199 GCGGCGACTGGTCGCTGTTCTGCCCGCGCGAGGCCCCGGGCCTGCACGAGTG-CTATGGC 1116141 Query 53774 GAGGAGTTTAACGAGA---TGTATCGGACGTACGCAGTTC-AGGGCCGCTACAAGAAGAA 53829 |||||||| ||||| | || | | |||| ||| | |||| || | | | || Sbjct 1116140 GAGGAGTT---CGAGACCCTCTACCAGCGTTACG-AGTCCGAGGGGCG-TGCCCG--CAA 1116088 Query 53830 GGTC---AAGGCGCGTGAGGTATGGGATGCA--ATCCTCAAGAGCCAGGTGGAGACGGGA 53884 |||| ||||| | | | ||| ||| ||| | || |||||||||||| || Sbjct 1116087 GGTCATGAAGGCCCAGCTGCTGTGG--CGCAAGATCATGGAGGCCCAGGTGGAGACCGGC 1116030 Query 53885 ACGCCGTACATGTGCTACAAGGATTCGGTCAACGAGAAGAGCAACCAGAAGAACATCGGC 53944 || || | ||| ||||||||| | |||| ||||| ||||||||||||| |||| Sbjct 1116029 ACCCCCTTCATCATGTACAAGGATGCCTGCAACCAGAAGTCCAACCAGAAGAACCTCGGT 1115970 Query 53945 GTCATCAA 53952 |||||| Sbjct 1115969 ACCATCAA 1115962 Score = 170 bits (188), Expect = 2e-37 Identities = 564/857 (66%), Gaps = 44/857 (5%) Strand=Plus/Minus Query 55096 TGACTTTGACAAGCTTCACGAAGTGACGCGTGTTGTGACTCGGAACCTGAACCGGGTCAT 55155 ||||||||| ||||| | | || || | || ||| | ||||||||| | || |||| Sbjct 1115835 TGACTTTGAGAAGCTGCGCACCGTCACCGGGGTCGTGGCCCGGAACCTGGATCGCATCAT 1115776 Query 55156 CGACAAGAATTACTACCCGACTGAAGCGGCGCGCAAGTCCAACCTCCGGCACCGGCCCAT 55215 ||||| || ||||||||| || | ||| || || ||||||||||| |||||||| || Sbjct 1115775 CGACATCAACTACTACCCGGTGGAGGAGGCCCGGAACTCCAACCTCCGTCACCGGCCGAT 1115716 Query 55216 CGCCATCGGTGTACAGGGCTTGGCCGACATCTTCATGATGCTCGGATTGCCCTTCGA--- 55272 | ||||||||| |||||| ||||||| | ||||| ||| | | |||| ||||| Sbjct 1115715 TGGCATCGGTGTCCAGGGCCTGGCCGATCTGTTCATCATGATGCGCATGCCGTTCGAGAG 1115656 Query 55273 CTCGGAACCTGCTCGAGAAATTAACCAGGACATCTTC-AGTCGCATCTACTTTGCAGCGC 55331 | |||| || || | | ||| ||| ||||||| || | ||||||||| || ||| Sbjct 1115655 CCCGGA---GGCGCGTGCCCTCAACAAGGCCATCTTCGAGAC-CATCTACTTCGCGGCGG 1115600 Query 55332 TCGAGGAGTCGTGTCATCTGGCTATGAGCGAGGGGACCTACGAGACGTTCCGTGATTCGC 55391 |||||| ||| || || ||| | ||| || | || | ||| | | || | Sbjct 1115599 TCGAGGCGTCCTGCCAGACGGCCGAGCGCGTCGGCCCGTATGCCTCGTACGAGGGGTCCC 1115540 Query 55392 CAGCTGACAAGGGACTTCTCCAGTTCGATCTATGGGGCAAGTCTGACCCCAT-------- 55443 | ||| || | ||||||||||| || |||| || ||||||| | Sbjct 1115539 CGGCTTCGGCCGGCCAGCTCCAGTTCGACCTGTGGG----GTGTGACCCCCTCCGACCGG 1115484 Query 55444 ---GTTT--GACAAGTTGAAGCATGACATTCACTTGT-GGGGCCTACGCAACTCCCTGCT 55497 | || | | ||||| | |||| || || ||||| || ||||| || || Sbjct 1115483 TGGGATTGGGCCGGCCTGAAGGAGCGCATT-GCTCGTCATGGCCTGCGTAACTCGCTCCT 1115425 Query 55498 CGTGGCGCCAATGCCAACCGCGTCGACGGCTCAGATCATGGGCAACAACGAGGCGTTCGA 55557 ||||| || ||||| || || || || | |||||| | ||| ||| ||| |||| Sbjct 1115424 GGTGGCCCCGATGCCGACGGCCTCCACCTCGCAGATCCTCGGCTTCAATGAGTGCATCGA 1115365 Query 55558 GCCGTACACGACCAACATCTACCTGCGCCGGACCCTAGCAGGTGAGTTTGTCATGATCAA 55617 ||| ||||| |||||||||| | || || || | || ||||| ||| |||| Sbjct 1115364 GCCCTACACCTCCAACATCTATGTCCGTCGTGTGCTGTCCGGGGAGTTCCAGATGGTCAA 1115305 Query 55618 CAAGCACCTCGTCAAGGACCTGCAGAAG-ATCAACAAGTGGAACCCGCAGATCAAGACGG 55676 | ||||| |||||||||| || | || |||||| | || | | | Sbjct 1115304 CCCCCACCTGATCAAGGACCT-CATTCGCATTGGGGTGTGGAATGACAATGTC-CGGCAG 1115247 Query 55677 AT-ATTGT-GCGGAACGGGGGGTCCGTCCAGAATCTGGAG-ATTCC-TCTGCG----TCT 55728 || || | || | ||| || ||||||||| | || | |||| || || || Sbjct 1115246 ATGATCATCGCCG-CCGGTGGCTCCGTCCAG---CGGGTGCCTTCCATCCCCGATGACCT 1115191 Query 55729 CAAGGAGATTTACCGGACGGTGTGGGAGATTCCACAGAAGAGTCTGATTGACATGAGTGC 55788 |||| | ||| ||| |||||||| ||| | | || |||||| || Sbjct 1115190 GAAGGCCCTCTACAAGACCACCTGGGAGATCAGCCAGCGGTCCATCATCGACATGGCCGC 1115131 Query 55789 TGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAACATCTTCAT-GGAGAATCCTT 55847 || || ||||| | |||||| ||| |||| |||||||||||||| || || || Sbjct 1115130 CGACCGGGGTGCCTTCATCGATCAGAGCCAGAGCCTGAACATCTTCATCGGCGAGCCCAC 1115071 Query 55848 CACTGGCCAAGTTGAGCTCGATGCACTTTTACGGGTGGAAGAAGGGACTCAAGACGGGTA 55907 | | ||| ||||| || |||||||| || || ||||||||||| |||||||| || | Sbjct 1115070 CGCCAGCC-GGTTGACTTCCATGCACTTCTATGGCTGGAAGAAGGGCCTCAAGACCGGCA 1115012 Query 55908 TGTACTATCTGCGGACC 55924 |||| || ||||| ||| Sbjct 1115011 TGTATTACCTGCGCACC 1114995 >seq11 Length=637296 Score = 100 bits (110), Expect = 3e-16 Identities = 189/271 (70%), Gaps = 8/271 (3%) Strand=Plus/Plus Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364 |||||||||||||| | || |||||||| || ||| ||||| |||||||| Sbjct 466710 GTGAAAATGTAACGCGGCGAGGCGGCATCCTTCCCGCCATTCAGACGGGTACCGAACATG 466769 Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACA 117424 || | |||||||| || || | ||||||| || ||| ||| || |||| | || Sbjct 466770 CCGCGCGGCTCCAGCAGATTGACATTGTTGGACCCGACATAGTCCTGGGCCATGCCGATG 466829 Query 117425 ATCGTACCTTGG--AGGCTCGCCTCACCATGGTGATACGCCGTCTGCTCCGCCACGTAGC 117482 || || | ||| ||| ||||| || || | || |||| ||||||| ||| |||| Sbjct 466830 ATGGT--CATGGAAAGGGAAGCCTCGCCGTGCAGGTAGGCCGAATGCTCCGACACATAGC 466887 Query 117483 CCGCCAGCTGAGCCACCTTCATGTC-TGACGTCAGGTTCTTCTTGAGGCAGGCATAA-AT 117540 || ||||||| |||||||||| || | || || || ||||| ||| ||| || | Sbjct 466888 CCACCAGCTGGGCCACCTTCACCTCGCGGCG-GAGATTGCGCTTGAAGCA-GCAGAAGAG 466945 Query 117541 CACCTTGCGCTGACTTGGCTTCAGACCATCC 117571 | ||| || || | |||||||| |||||| Sbjct 466946 AATCTTCCGGTGGCCGGGCTTCAGCCCATCC 466976 Score = 87.8 bits (96), Expect = 2e-12 Identities = 119/166 (72%), Gaps = 0/166 (0%) Strand=Plus/Plus Query 152952 GCGCGGCTTTCCCCGGAGTGGAAACACGCCGAACGCGTTGCGGCCTACAACGCTCAGACC 153011 |||| ||| || || || || || || ||| | || |||||| || ||| ||| || Sbjct 467726 GCGCACCTTGCCTCGCAGGGGGAAGACACCGTAGTAGTCGCGGCCGACGACGACCAGGCC 467785 Query 153012 GGCAATAGCAAGGGCTTTCGCCGAGTCACCCTCGGTGATAATAAGCGTACAGTCGTGAGA 153071 || | || ||||| || |||||||||||||| || | || || || || | ||| || Sbjct 467786 GGACACGGCCAGGGCCTTGGCCGAGTCACCCTCCGTCAGGATGAGGGTGCACTTGTGGGA 467845 Query 153072 CCGATGAGTACCGGCCCAGTTGGCGTCGTCAAGCTTGGGGATTCCC 153117 | || |||||| |||||||||||| ||||||||||| ||| Sbjct 467846 ATTGCGCGTGCCGGCCTGGTTGGCGTCGTCCAGCTTGGGGATGCCC 467891 >seq3 Length=3619281 Score = 93.3 bits (102), Expect = 5e-14 Identities = 96/126 (76%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 124712 CTCGTGGTTGAACAGAATGCCAGTACACGCAAACATCCCGTACGACTCGCGGTAGTTTTT 124771 ||| |||||||| || |||||| | || ||| |||| ||||| | |||||||||||| || Sbjct 2746494 CTCATGGTTGAAGAGGATGCCATTGCAGGCATACATGCCGTAGGCCTCGCGGTAGTTCTT 2746553 Query 124772 CGTCATCCAATACCCAAAGAGCTTGGACACGCCATAGGGGCTTCGGGGGTAGAATGGGGT 124831 | ||||| |||| | ||||||| |||||| || || || |||||||| ||||| Sbjct 2746554 CACAATCCAGAACCCGTACAGCTTGGCCACGCCGTACGGCGACCGCGGGTAGAAAGGGGT 2746613 Query 124832 GTTTTC 124837 || || Sbjct 2746614 CTTCTC 2746619 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547214536197200