Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fonticula_20alba_20[genbank_20GCA_5F000388065.2_202014-04-24] 214 sequences; 31,296,464 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq5 264 1e-65 seq1 158 1e-33 seq7 143 3e-29 seq3 129 7e-25 seq11 91.5 2e-13 >seq5 Length=2316015 Score = 264 bits (292), Expect = 1e-65 Identities = 920/1417 (65%), Gaps = 44/1417 (3%) Strand=Plus/Plus Query 80374 CGACGCAGATACAGGTTTGTAGTGTAAGGCTCAAATGC-CTCGTTGTTTCCGAGGATCTG 80432 ||||| | ||| | ||| | ||||| ||||| | ||| ||| ||| ||||||||||| Sbjct 1115335 CGACGGACATAGATGTTGGAGGTGTAGGGCTCGA-TGCACTCATTGAAGCCGAGGATCTG 1115393 Query 80433 AGCCGTGCTCGCCGTCGGCATCGGGCCGACCAACAGTGAATTCCGCAGGCCGTGCTTCTT 80492 | ||| ||||||||||||||| | |||| || || || |||||||| || Sbjct 1115394 CGAGGTGGAGGCCGTCGGCATCGGGGCCACCAGGAGCGAGTTACGCAGGCCATGACGAGC 1115453 Query 80493 GATATCCTCGCGCAAATCTGACCAAAAATCAACC---CCAACGCTGTGAC--CCCACATG 80547 || ||| || | | |||| | ||| | | | || || |||||| | Sbjct 1115454 AATGCGCTCCTTCAGGCCGGCCCAATC--CCACCGGTCGGAGGGGGTCACACCCCACAGG 1115511 Query 80548 TCGTGCTGCAAGATGCCCTCCGACGCCGGAGACCCCGCGAACGTCTCGTACGGGCCCTCC 80607 ||| ||| | ||| |||| ||||| |||||| || ||| | |||||||| | Sbjct 1115512 TCGAACTGGAGCTGGCCGGCCGAAGCCGGGGACCCCTCGTACGAGGCATACGGGCCGACG 1115571 Query 80608 GTCTTGGCCAGCTCACACGACTCCATAAGGGCCGCGTGATAAATGCACTCAAAGACGCCC 80667 || |||| || || ||| || | |||||| || ||| ||| |||| | || Sbjct 1115572 CGCTCGGCCGTCTGGCAGGACGCCTCGACCGCCGCGAAGTAGATGGTCTCGAAGATGGCC 1115631 Query 80668 TTGTTCACACCGCGCGCCTGTGGGTCGTCGAACGACAAGCCCATCATCATGAACACGTCA 80727 ||||| | | ||||||| ||| ||||||| || || |||||| ||||||| || Sbjct 1115632 TTGTTGAGGGCACGCGCCTCCGGGCTCTCGAACGGCATGCGCATCATGATGAACAGATCG 1115691 Query 80728 GCCAGGCCCTGAACGCCGATGGCGATCGGGCGGTGGCGCTTGTTCGATCGCTCGGCCTCC 80787 ||||||||||| || |||||| | ||||| ||||| || ||| || | ||||||| Sbjct 1115692 GCCAGGCCCTGGACACCGATGCCAATCGGCCGGTGACGGAGGTTGGAGTTCCGGGCCTCC 1115751 Query 80788 GGAATTGGGTAAAAGTTATTATCGATGACGCGGTTCAGGTTGCGTGTAACAACCCGTGTA 80847 | ||||| |||| | ||||||| ||| | |||||| || | || |||| || Sbjct 1115752 TCCACCGGGTAGTAGTTGATGTCGATGATGCGATCCAGGTTCCGGGCCACGACCCCGGTG 1115811 Query 80848 ACATCATGAAGTTTCTGAAAGT----CGAATTG-----GTTCCCC---------TTCACA 80889 || | || |||| ||||| ||| || | || || | | | Sbjct 1115812 ACGGTGCGCAGCTTCTCAAAGTCATACGACATGGCCCCGGTCTCCGGGCAGGTGTGGATA 1115871 Query 80890 AATGCCGGAAGGCTCAGGGACGCCAGATTGCACACGGCCACCTCTTCAGCATCT-GTAAA 80948 || ||| ||| | ||| ||||| ||||||||||||||||| || | || || | Sbjct 1115872 AACTGCGGCAGGGCAATGGAGGCCAGGTTGCACACGGCCACCTCGTC-GTTGCTGGTGTA 1115930 Query 80949 CTCGACGATTTCCGTGCACAAATTAGAAGACTTAATTGTACCCAGGTTTTTCTGGTTTGA 81008 || |||||| || ||||| | || || |||| || ||||| ||||| |||||||| || Sbjct 1115931 CTGGACGATCTCGGTGCAGAGGTTCGAGCACTTGATGGTACCGAGGTTCTTCTGGTTGGA 1115990 Query 81009 CTTGGCGTTGCAAGCGTCCTTGTAGCACATGTACGGGGTACCGGTCTCGACCTGTGACTT 81068 ||| |||||| || |||||||| ||| | ||||| |||||||| ||||| | || Sbjct 1115991 CTTCTGGTTGCAGGCATCCTTGTACATGATGAAGGGGGTGCCGGTCTCCACCTGGGCCTC 1116050 Query 81069 GAGGATGGCGTCCCAAATCTCGCGCGCCTTGACCACCTTGCGGAATTTGCCTTCGGCCAC 81128 | ||| | ||| | | | ||||| | ||||||||| || |||| | | Sbjct 1116051 CATGATCTTGCGCCACAGCAGCTGGGCCTTCATGACCTTGCGGGCACGCCCCTCGGACTC 1116110 Query 81129 ATACTTGGCGTA-AGCTTCGTCGAACTTGGCACCGTGAAGTTCAGTG-AGGTCTGGGCAC 81186 || ||| || || ||||||| | || | || ||| ||| | ||| | Sbjct 1116111 GTAACGCTGGTAGAGGGTC-TCGAACTCCTCGCCATAGCACTC-GTGCAGGCCCGGGGCC 1116168 Query 81187 TCGTTAGGGCACATCAGGTGCCAGTCGGTGTCGTTCTCTACAGCCTTCATGAAAGCGTCA 81246 ||| ||||| | ||| ||||||| | || ||| || |||||||||| || Sbjct 1116169 TCGCGCGGGCAGAACAGCGACCAGTCGCCGCCGGACTCCACGCGCTTCATGAAAAGATCC 1116228 Query 81247 GGGATCCAGAGGGCGGTGAACAGGTCGCGGCAGCGCGCCTCCTCATCACCCTGGTTGAGG 81306 || | ||| ||||| ||| ||||| ||| || | |||||| | || ||| | Sbjct 1116229 GGCACCCACAGGGCAAAGAAGAGGTCACGGGCACGAGTCTCCTCGGCGCCGGTGTTCTTG 1116288 Query 81307 CGCAACTCGAGAAAGTCCATGATGTCCGCATGCCATGGCTCCAGATACACGGCGATCGAC 81366 |||| ||||| ||| | | ||||| ||||| |||||||| || | ||| | || Sbjct 1116289 CGCAGCTCGATGAAGGACTCCACATCCGCGTGCCAGGGCTCCAGGTAGATGGCAAACGCG 1116348 Query 81367 CCCTTGCG---ACGGCCACCCTGGTTGACGTAACGGGCAGTCGCGTTAAATACACGCAAC 81423 || ||| ||||||||||| ||||||||| || || || || || ||||||| | Sbjct 1116349 CCGGGGCGCTTGTTGCCACCCTGGTCGACGTAACGCGCGGTGGCATTGAACACACGCAGC 1116408 Query 81424 ATAGGGATGATACCATCTGACTGACCGTTCGTACCCACGATACGCGACCCCTTGGCGCGC 81483 || |||| | || | || | || || || || | || ||||| ||||||| Sbjct 1116409 ATCGGGACCAGCCCGTTGGAGTAGCCATTGGTGCCGGCAATGTAGGACCCGGTGGCGCGG 1116468 Query 81484 ACCTTGCTG---ATTGAAAGACCGATGCCACCTGACCACTTTGAAATCTGAGCACACCGG 81540 | ||| || |||| || |||||||| || | ||| ||||| | || ||| || Sbjct 1116469 ATGTTG-TGAACATTG--AGGCCGATGCCGCCGGCGGTCTTGGAAATGAGGGCGCACTGG 1116525 Query 81541 TTCATGGTCTCATAAATTCCCTCGATGCTATCTTTTTTCATGTCAAGCAAGAAACAGCTT 81600 || ||| || ||||| || || || || | |||||| |||| ||| || Sbjct 1116526 CGCAGGGTGTCGTAAATGCCATCAATCGAGTCGTCCTTCATGGTGAGCAGGAAGCAAGAC 1116585 Query 81601 GACATCTGAGGGCTTTTTGAGCCGGCATTGAACAGTGTTGGGGTCGCGTGAATGAAATAA 81660 |||| ||| || | || || ||||| || || || | || || |||| || Sbjct 1116586 GACAGCTGCGGCCGGGGAGACCCACAGTTGAAGAGGGTCGGCGAGGCATGCGTGAAGTAG 1116645 Query 81661 CGGTTTGACATCAGGTCATAGGTTTCCTTGACGCGTGGAATATCGTCACCGTGAATACCG 81720 || | ||||| || ||||| ||| | || || || ||| || || || ||| Sbjct 1116646 CGCTGGGACATGTACTCGTAGGTCTCCAGGGCGGCGGGGATGTCGCTGCCATGGATGCCG 1116705 Query 81721 ATAGCTACACGCATAAACATGTACTG-GGGCGTCTCG 81756 | || || ||||| | ||||||||| ||||| |||| Sbjct 1116706 ACGGCCACGCGCATGATCATGTACTGCGGGCG-CTCG 1116741 Score = 96.9 bits (106), Expect = 4e-15 Identities = 117/157 (75%), Gaps = 2/157 (1%) Strand=Plus/Plus Query 80038 GTCCGCAGATAGTACATGCCCGTCTTGAGGCCCTTCTTCCAGCCGTACAGGTGCATAGAA 80097 || ||||| || |||||||| ||||||||||||||||||||||| || | |||||| ||| Sbjct 1114996 GTGCGCAGGTAATACATGCCGGTCTTGAGGCCCTTCTTCCAGCCATAGAAGTGCATGGAA 1115055 Query 80098 CTGAGCTTCGCAAGTGTGGGGTTCTCC-ATGAAGATGTTCAGAGACTGAGACTGACAGAT 80156 | | | || | | ||| || || |||||||||||||| ||| |||| ||| Sbjct 1115056 GTCAAC-CGGCTGGCGGTGGGCTCGCCGATGAAGATGTTCAGGCTCTGGCTCTGATCGAT 1115114 Query 80157 GAAAGCCCCACGATCTGCCGCCATTTCAATAATTGAC 80193 ||| || || || || || ||||| || || || ||| Sbjct 1115115 GAAGGCACCCCGGTCGGCGGCCATGTCGATGATGGAC 1115151 >seq1 Length=4772237 Score = 158 bits (174), Expect = 1e-33 Identities = 171/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| |||||||| || ||||||||||| || || || ||||| ||| | | Sbjct 1125249 ATGCAGATCTTCGTCAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTCGAGCCCTCT 1125308 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || ||| | | |||||||| ||||||||||||||||| || || || || ||| Sbjct 1125309 GACTCCATCGATGCCGTCAAGGCTAAGATTCAGGACAAGGAGGGTATCCCCCCTGATCAG 1125368 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||||| || ||||| || || ||||| |||||||| | |||||||| | ||||| || Sbjct 1125369 CAGCGCCTGATTTTCGCCGGCAAGCAGCTCGAGGACGGCCGTACCCTCTCGGACTACAAC 1125428 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| ||||| || || || ||| | || || || ||||| Sbjct 1125429 ATCCAGAAGGACTCCACCCTCCACCTTGTCCTCCGCCTGCGTGGTGG 1125475 >seq7 Length=2157034 Score = 143 bits (158), Expect = 3e-29 Identities = 372/564 (66%), Gaps = 6/564 (1%) Strand=Plus/Plus Query 64297 TTCCCAATTAGGTACCCTGATTTGTGGGAGCTTTACAAGAAAGCCATCGCAAGTTTCTGG 64356 ||||| || ||||| ||| | ||| || | |||||||| ||| || |||||| Sbjct 326105 TTCCCCATCGAGTACCATGAGATTTGGCAGATGTACAAGAAGGCCGAGGCCTCCTTCTGG 326164 Query 64357 ACGGTCGAGGAGGTTGATCTCGCCAAGGATCTCAGCGACTGGGAAAAC---CTAAACTCA 64413 || | ||||||||| || ||| || || || ||||||| | ||| || | | | Sbjct 326165 ACCGCCGAGGAGGTGGACCTCTCCCGCGACCTGGACGACTGGAACAACAAGCTGACCGCC 326224 Query 64414 CAGGAACAGCACTTCATCAAGTTGGTCCTAGCATTCTTCGCATCAAGTGACGGAATTGTG 64473 | || | | |||||||| || || || |||||||| | || || ||||| Sbjct 326225 AACGAGCGGTACTTCATCTCCCATGTGCTGGCGTTCTTCGCCGCGTCGGATGGCATTGTC 326284 Query 64474 TTTGAGAATTTGGACCTAAATTTTACAAAGGATGTTCAGATCCCAGAGGCGCGGTCATTC 64533 ||||||| ||| | || | ||| || |||||| | ||||| |||| ||| Sbjct 326285 AATGAGAATCTGGTCAACCGGTTCTCCTCGGAGGTGCAGATCGCCGAGGCCCGGTGCTTC 326344 Query 64534 TATGCGTATCAGGGATTTAACGAAAGTATTCATGGCGAGACGTATTCGCTCATGATTGAC 64593 || | | ||| | ||| | || || |||||| ||| ||||| |||||||| Sbjct 326345 TACGGCTTCCAGATCGCCATCGAGAACATCCACAGCGAGATGTACTCGCTGCTGATTGAC 326404 Query 64594 AAGTTTGTTCGGGATCCTGTCGAGAAGGATGGACTGTTCAGGGCTATAGAGACTGTACCC 64653 | | ||| |||||| | |||| || || ||| | || || ||||| | ||| Sbjct 326405 ACCTATGTGCGGGATGTGGCCGAGCGCGACCACCTCTTCGGCGCCATCGAGACCATCCCC 326464 Query 64654 GCTGTTACTAAAAAGGCTGAATGGGCCATCCGGTGGATGAATCGTGGGTCGTCGT--TTG 64711 || | || ||||| || |||||||| || ||||| | | |||||| || Sbjct 326465 TGCGTCAAGAAGAAGGCCGACTGGGCCATGCGCTGGATCGAGGACGAGTCGTCCACCTTC 326524 Query 64712 GTCA-GCGTCTCGCAGCTTTTGCCTGTGTGGAAGGAATTTTCTTTTCTGGGTCATTCTGT 64770 | || ||| || | || || ||| ||||| || |||||||| || || || ||| Sbjct 326525 GCCACGCGCCTGGTGGCCTTCGCCGCCGTGGAGGGCATTTTCTTCTCCGGCTCCTTCGCC 326584 Query 64771 TCTATTTTCTGGCTAAAAAAGCGGGGCCTGATGCCAGGTCTGTCGTTTTCGAACGAGCTG 64830 | || |||||||| || ||||| ||||| ||||| || ||| | || || ||||| Sbjct 326585 GCCATCTTCTGGCTGAAGAAGCGCGGCCTCATGCCCGGGCTGACCTTCAGCAATGAGCTC 326644 Query 64831 ATCTCTCGGGACGAGGGGCTCCAC 64854 ||||| || ||||||||||||||| Sbjct 326645 ATCTCCCGTGACGAGGGGCTCCAC 326668 >seq3 Length=3619281 Score = 129 bits (142), Expect = 7e-25 Identities = 142/189 (75%), Gaps = 0/189 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || || || ||||| |||||||| ||||| || || |||||||||||| | | Sbjct 1037527 ATGCAGATTTTCGTTAAGACCCTTACCGGTAAGACCATCACCCTTGAGGTTGAGCCCTCT 1037468 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || || | | |||||||| ||||||||||||||||| || || || || ||| Sbjct 1037467 GACTCGATCGACGCCGTCAAGGCTAAGATTCAGGACAAGGAGGGTATCCCCCCTGATCAG 1037408 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||||| || ||||| || || ||||| |||||||||| || ||||| | ||||| || Sbjct 1037407 CAGCGCCTGATTTTCGCCGGCAAGCAGCTCGAGGATGGCCGCACCCTCTCCGACTACAAC 1037348 Query 27586 GTCCAAAAG 27594 |||| ||| Sbjct 1037347 ATCCAGAAG 1037339 Score = 98.7 bits (108), Expect = 1e-15 Identities = 237/356 (67%), Gaps = 11/356 (3%) Strand=Plus/Minus Query 24753 GGCAAGGTGCAGGAGACGCCACAGTCGGAGACCACTCCATTTTATCCGCGAAGCCCGTAT 24812 ||| |||| | ||||| || ||||| |||| || || || || ||||| ||||| Sbjct 2746646 GGCCAGGTTCGGGAGATCCCCCAGTCCGAGAAGACCCCTTTCTACCCGCGGTCGCCGTAC 2746587 Query 24813 GGGGTCTCAAAGGTGTTCGCGTACTGGATAACCAAGAACTACCGTGAGGCCCATGGGATA 24872 || || | ||| ||| || || |||||| ||||||||||| |||||| | || || Sbjct 2746586 GGCGTGGCCAAGCTGTACGGGTTCTGGATTGTGAAGAACTACCGCGAGGCCTACGGCATG 2746527 Query 24873 TATGCATGCAACGGAATTCTGTTCAACCATGAGTCGGAGCGTCGGGGACCTGAATTTGTT 24932 ||||| ||||| || || || |||||||||||| || || || | || || Sbjct 2746526 TATGCCTGCAATGGCATCCTCTTCAACCATGAGAGCCCCCGGCGTGGGTTTACCTTCGTC 2746467 Query 24933 ACACGAAAGATTACTCTTGGTATTGACCATTGGATCAAGACAAGGGCACCT------ATT 24986 || || ||||| | | | | | ||| ||| | | || || || | Sbjct 2746466 ACCCGGAAGATCAGCCGCGCCGTGGCCCA---AATCCA-CCTTGGCCAGCTGGAGTGCCT 2746411 Query 24987 GAG-CTGGGAAACCTAGATGCCAAACGTGATTGGGGGCATGCAGCCGACTACGTCGACGC 25045 ||| ||||| ||||| | ||| || |||||||| || || ||||||||||| | Sbjct 2746410 GAGCCTGGGCAACCTGAACGCCCTGCGCGATTGGGGCCACGCTCGTGACTACGTCGAGGG 2746351 Query 25046 CATGTGGCGCATGCTCCAACAGAATAAGCCAGAGGATTTTGTGATCGGCACCGGTC 25101 |||||||| |||||||| | ||||| ||||| | ||| | | |||||||| Sbjct 2746350 CATGTGGCTGATGCTCCAGAGCGACAAGCCGGAGGACTATGTTCTGGCCACCGGTC 2746295 >seq11 Length=637296 Score = 91.5 bits (100), Expect = 2e-13 Identities = 116/160 (73%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 31200 GGGAATTCCGAAGCTCGACGACGCCAACTGGGCCGGTACCCACAAGTCGCACGAGTGCAC 31259 ||| || || ||||| |||||||||||| |||||| || | ||| || ||| ||||||| Sbjct 467891 GGGCATCCCCAAGCTGGACGACGCCAACCAGGCCGGCACGCGCAATTCCCACAAGTGCAC 467832 Query 31260 GCTTATTATTACCGAGGGTGACTCGGCAAAGGCGCTTGCTATTGCTGGCTTGAGTGTTGT 31319 || || | || |||||||||||||| ||||| || || | | ||| || || || Sbjct 467831 CCTCATCCTGACGGAGGGTGACTCGGCCAAGGCCCTGGCCGTGTCCGGCCTGGTCGTCGT 467772 Query 31320 GGGGCGCAATGCGTTCGGGGTGTTTCCGCTCCGAGGCAAG 31359 || ||| | | ||| || || || || ||||||||| Sbjct 467771 CGGCCGCGACTACTACGGTGTCTTCCCCCTGCGAGGCAAG 467732 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570308874419680