Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fonticula_20alba_20[genbank_20GCA_5F000388065.2_202014-04-24] 214 sequences; 31,296,464 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq2 84.2 2e-11 >seq2 Length=3916072 Score = 84.2 bits (92), Expect = 2e-11 Identities = 159/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 34220 TTTCCGCTGCTGACGACGAAACGTGTGTACTGGAAGGGCGTGGTCGAGGAGCTGCTGTGG 34279 || || ||| |||| || || ||||| | |||| || |||| ||| |||||| | ||| Sbjct 3895630 TTCCCCCTGTTGACCACCAAGCGTGTTTTCTGGCGCGGTGTGGCCGAAGAGCTGTTCTGG 3895689 Query 34280 TTCGTGAGGGGGGCCACGAACACCAAGGAGCTCTCGTCCCGGGGGGTGAAGATCTGGGAC 34339 ||| | | | | ||| || ||||||||||||| | ||| | | ||||||||| Sbjct 3895690 TTCCTCGGCGCGCGCACCGACGGCAAGGAGCTCTCGGCGAAGGGTATCCACATCTGGGAC 3895749 Query 34340 GCTCACGGGTCTCGAGACTTTCTGGACAAGCGGGGGTTCCCATCTCGGGAG-GAGGGCGA 34398 | | || || || || || |||| || ||| | || | | || | ||||| || Sbjct 3895750 GGCAATGGCAGCCGCGAGTTCCTTGACAGCCGAGGGCT-GCACCACCGGCGCGAGGGGGA 3895808 Query 34399 -CTTGGGCCCGGTCTACGGGTTCCAGTGGAGACACTTTGGGGCGGAGTA 34446 ||||||||| | || || ||||||||| | |||||||| || ||||| Sbjct 3895809 CCTTGGGCCC-ATTTATGGCTTCCAGTGGCGGCACTTTGGCGCCGAGTA 3895856 Score = 84.2 bits (92), Expect = 2e-11 Identities = 159/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 6899 TACTCCGCCCCAAAGTGTCTCCACTGGAACCCGTAGACCGGGCCCAAG-TCGCCCTC-CT 6956 ||||| || |||||||| | ||||||||| || || | ||||||||| || ||||| | Sbjct 3895856 TACTCGGCGCCAAAGTGCCGCCACTGGAAGCCATAAAT-GGGCCCAAGGTCCCCCTCGCG 3895798 Query 6957 CCCGAGATGGGAACCCCCGCTTGTCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGATCT 7016 || | | || | ||| || |||| || || || || || | |||||||||| | Sbjct 3895797 CCGGTGGTGC-AGCCCTCGGCTGTCAAGGAACTCGCGGCTGCCATTGCCGTCCCAGATGT 3895739 Query 7017 TCACCCCCCGGGACGAGAGCTCCTTGGTGTTCGTGGCCCCCCTCACGAACCACAGCAGCT 7076 | ||| | ||||||||||||| || ||| | | | | |||||| | ||||| Sbjct 3895738 GGATACCCTTCGCCGAGAGCTCCTTGCCGTCGGTGCGCGCGCCGAGGAACCAGAACAGCT 3895679 Query 7077 CCTCGACCACGCCCTTCCAGTACACACGTTTCGTCGTCAGCAGCGGAAA 7125 | ||| |||| || |||| | ||||| || || |||| ||| || || Sbjct 3895678 CTTCGGCCACACCGCGCCAGAAAACACGCTTGGTGGTCAACAGGGGGAA 3895630 Score = 82.4 bits (90), Expect = 7e-11 Identities = 112/157 (71%), Gaps = 6/157 (4%) Strand=Plus/Plus Query 34576 GATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGT------CGCGAATGGGGA 34629 |||||| ||||| || |||||| | ||| || ||||| || | ||| || Sbjct 3896116 GATGGCTCTCCCTCCCTGCCACCTGATGGCCCAGTTTTACGTGAACATCGAGCGTGGCGA 3896175 Query 34630 GCTGTCCTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTCAACAT 34689 ||||||||||||| |||| || || ||| | || | ||| | || ||||| |||||||| Sbjct 3896176 GCTGTCCTGCCAGTTCTACCAGCGCTCGTGTGATCTTGGGCTCGGTGTGCCATTCAACAT 3896235 Query 34690 TGCTAGTTACGCTCTGCTCACGTACATGATCGCTCAT 34726 || || || || ||||| |||| | |||| || ||| Sbjct 3896236 CGCCAGCTATGCGCTGCTGACGTGCCTGATTGCCCAT 3896272 Score = 82.4 bits (90), Expect = 7e-11 Identities = 112/157 (71%), Gaps = 6/157 (4%) Strand=Plus/Minus Query 6619 ATGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAACCC 6678 ||| || |||| | |||| ||||| || || || || |||||||| ||||| || | ||| Sbjct 3896272 ATGGGCAATCAGGCACGTCAGCAGCGCATAGCTGGCGATGTTGAATGGCACACCGAGCCC 3896213 Query 6679 CATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGCG------ACGTA 6732 | || | ||| || || |||| ||||||||||||||| ||| | || ||||| Sbjct 3896212 AAGATCACACGAGCGCTGGTAGAACTGGCAGGACAGCTCGCCACGCTCGATGTTCACGTA 3896153 Query 6733 GAATTGGCAGAGGGTGTGGCACGGGGGGAGCGCCATC 6769 || ||| | |||||| || ||||| |||||| Sbjct 3896152 AAACTGGGCCATCAGGTGGCAGGGAGGGAGAGCCATC 3896116 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448261200898080