Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fonticula_20alba_20[genbank_20GCA_5F000388065.2_202014-04-24] 214 sequences; 31,296,464 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq1 161 2e-34 seq3 127 5e-24 >seq1 Length=4772237 Score = 161 bits (178), Expect = 2e-34 Identities = 163/212 (77%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||||||||| || ||||| || || |||||||| || |||| ||||| | || || Sbjct 1125460 AGGACAAGGTGGAGGGTGGAGTCCTTCTGGATGTTGTAGTCCGAGAGGGTACGGCCGTCC 1125401 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || ||||||||||| ||||| || ||||| || || ||||| || | || ||||||||| Sbjct 1125400 TCGAGCTGCTTGCCGGCGAAAATCAGGCGCTGCTGATCAGGGGGGATACCCTCCTTGTCC 1125341 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 || ||||| || ||| ||||||| ||||||| || |||||||| ||||| ||| Sbjct 1125340 TGAATCTTAGCCTTGACGGCATCGATGGAGTCAGAGGGCTCGACCTCGAGGGTGATGGTC 1125281 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || ||||| ||||| || || | |||||| Sbjct 1125280 TTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 1125249 >seq3 Length=3619281 Score = 127 bits (140), Expect = 5e-24 Identities = 141/188 (75%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 210927 TTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATA 210986 || |||||||| || || | ||||| | ||||| || ||||||||||| ||||| || Sbjct 1037340 TTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAAATC 1037399 Query 210987 AGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCG 211046 ||||| || || ||||| || | || ||||||||||| ||||| || ||| ||| Sbjct 1037400 AGGCGCTGCTGATCAGGGGGGATACCCTCCTTGTCCTGAATCTTAGCCTTGACGGCGTCG 1037459 Query 211047 ATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAAC 211106 || | ||||||| |||||||| || ||||| ||||| || || || ||||| || || Sbjct 1037460 ATCGAGTCAGAGGGCTCAACCTCAAGGGTGATGGTCTTACCGGTAAGGGTCTTAACGAAA 1037519 Query 211107 ACCTGCAT 211114 | |||||| Sbjct 1037520 ATCTGCAT 1037527 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159148821750110